Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00417 ATGGTGATGATGGTGACGGAGGGAAACGACAGCAGCTGCCGCAGCGGAGTGCAGCGCCATACGACGTCGTCATCGTCCTCGCCGGCGCAGAGCCGGCAACAGCGGCAGAAGGTGGAAGTGTACAACGAGATTCTTCGCCGGTTGAAGGATTCCGGCCACGAAGAAGCTATGCAACCTGGCTTCCACGATCAGCTTTGGGCTCACTTCAATCGCCTTCCTACACGGTATGCGCTGGATGTGAATGTGGAAAGGGCGGCAGATGTTCTTATGCACAAGAGATTGTTGCATTTGGCACATGATCCTGCTAATAGGCCTTCAATTGAAGTTCGATTAGTTCAGGTTCATCCCATATCCGATGGAAACTCGGCTGACACTTTTGAATCAGATGATCCTGGGATAGAATCTGGTCAAAGTTCTTCAAAGTACTCAAGCAGACAGAGTATACATCCACCTCCTGCTTTTGGTTCTTCTCCTAATCTTGAAGCACTGGCTCTTGAAGCAAATAATTCTGAAGACATAGAAGAGGAACAATCTGTACATGCCAATGTTCAATATTCACGGCCCATGCATGAAATCACCATCTCAACAGATGACAAGCCCAAGCTTCTCAGTCAGTTAACTGCTTTGCTTGCTGAGATTGGACTGAACATCCAAGAAGCACATGCCTTTTCCACAACTGATGGTTACTCATTAGATGTGTTTGTTGTTGAAGGATGGCCCTATGAGGAAACAGAAAAGCTTAAAGAAGCATTGGAAAGAGAAGTCTTGAAGAAGATTGAGAGACAGGTGAGGTCCAGTCCGCAATCCGTATCTTCTGTTGACCAGCCTGATCAAGCAAAGATGAAAAGCGAACTGGATCATTTGACAATACCAAATGATGGGACAGATGTTTGGGAAATAGATCCTAAACATTTGAAATATGGAACTCAAATTGCTTCTGGGTCATATGGTGAACTATTTAAAGGTGTATATTGTAGCCAGGAAGTAGCCATCAAAGTTCTCAAGGCTGAGCATGTAAATTCAGAATTGCAGAGAGAGTTCGCACAGGAAGTCTATATCATGAGAAAGGTTCGACACAAGAATGTTGTACAATTCATAGGAGCATGTACCAAGCCCCCACGCTTATGCATAGTAACAGAATTTATGTCTGGTGGAAGTGTGTATGACTACCTACATAAGCAGAAGGGCTTTTTTAAATTTCCTACCCTGCTCAAAGTAGCGATTGATGTTTCTAAAGGAATGAACTACTTGCACCAACATAACATAATCCATAGAGACTTGAAGGCTGCCAATCTTTTGATGGATGAAAACTGTACTGTAAAGGTCGCTGATTTTGGGGTTGCTAGAGTTAAAGCTCAATCTGGCGTCATGACAGCAGAAACTGGAACATATCGATGGATGGCTCCTGAGGTTATAGAACACAAGCCGTATGATCACAAGGCTGATGTATTTAGTTTTGGAATTGTTTTATGGGAATTGCTCACTGGAAAGCTTCCATACGAATATTTAACCCCCCTACAGGCAGCTATAGGAGTGGTTCAAAAGGGTTTACGACCCACCATCCCCAAGAACACTCATCCAAAGTTTGTTGAGCTTCTTGAGAGGTCTTGGCAGCAAGATCCAACATTGAGACCCGATTTCTCCGAAATTATCGAGATCCTGCAGCAGTTAGCAAAGGAGGTTGGAGATGGAGAGGAGCGGCACAAGGATAAATCTGGAGGACTACTGTCAGTCCTCAGACGAGGACATCACTAA 1755 0.4456 MVMMVTEGNDSSCRSGVQRHTTSSSSSPAQSRQQRQKVEVYNEILRRLKDSGHEEAMQPGFHDQLWAHFNRLPTRYALDVNVERAADVLMHKRLLHLAHDPANRPSIEVRLVQVHPISDGNSADTFESDDPGIESGQSSSKYSSRQSIHPPPAFGSSPNLEALALEANNSEDIEEEQSVHANVQYSRPMHEITISTDDKPKLLSQLTALLAEIGLNIQEAHAFSTTDGYSLDVFVVEGWPYEETEKLKEALEREVLKKIERQVRSSPQSVSSVDQPDQAKMKSELDHLTIPNDGTDVWEIDPKHLKYGTQIASGSYGELFKGVYCSQEVAIKVLKAEHVNSELQREFAQEVYIMRKVRHKNVVQFIGACTKPPRLCIVTEFMSGGSVYDYLHKQKGFFKFPTLLKVAIDVSKGMNYLHQHNIIHRDLKAANLLMDENCTVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKNTHPKFVELLERSWQQDPTLRPDFSEIIEILQQLAKEVGDGEERHKDKSGGLLSVLRRGHH 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00417 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Pumo3g00417 584 CDD STKc_MAP3K-like 311 554 - -
Pumo3g00417 584 SMART serkin_6 305 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00417 584 ProSiteProfiles ACT domain profile. 191 272 IPR002912 -
Pumo3g00417 584 Pfam Protein tyrosine and serine/threonine kinase 305 554 IPR001245 GO:0004672|GO:0006468
Pumo3g00417 584 ProSiteProfiles Protein kinase domain profile. 305 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00417 584 MobiDBLite consensus disorder prediction 1 36 - -
Pumo3g00417 584 FunFam serine/threonine-protein kinase HT1 384 574 - -
Pumo3g00417 584 FunFam Serine/threonine-protein kinase isoform 1 295 383 - -
Pumo3g00417 584 CDD ACT_TyrKc 189 256 - -
Pumo3g00417 584 MobiDBLite consensus disorder prediction 562 577 - -
Pumo3g00417 584 SUPERFAMILY ACT-like 189 253 IPR045865 -
Pumo3g00417 584 SUPERFAMILY Protein kinase-like (PK-like) 289 554 IPR011009 -
Pumo3g00417 584 MobiDBLite consensus disorder prediction 562 584 - -
Pumo3g00417 584 Gene3D Phosphorylase Kinase; domain 1 295 383 - -
Pumo3g00417 584 MobiDBLite consensus disorder prediction 8 36 - -
Pumo3g00417 584 MobiDBLite consensus disorder prediction 131 153 - -
Pumo3g00417 584 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 43 560 - -
Pumo3g00417 584 PRINTS Tyrosine kinase catalytic domain signature 379 392 IPR001245 GO:0004672|GO:0006468
Pumo3g00417 584 PRINTS Tyrosine kinase catalytic domain signature 481 503 IPR001245 GO:0004672|GO:0006468
Pumo3g00417 584 PRINTS Tyrosine kinase catalytic domain signature 416 434 IPR001245 GO:0004672|GO:0006468
Pumo3g00417 584 PRINTS Tyrosine kinase catalytic domain signature 462 472 IPR001245 GO:0004672|GO:0006468
Pumo3g00417 584 PRINTS Tyrosine kinase catalytic domain signature 525 547 IPR001245 GO:0004672|GO:0006468
Pumo3g00417 584 MobiDBLite consensus disorder prediction 120 158 - -
Pumo3g00417 584 Gene3D - 188 262 - -
Pumo3g00417 584 Gene3D Transferase(Phosphotransferase) domain 1 384 574 - -
Pumo3g00417 584 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00417 Pumo-Chr3 5933227 5944460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00417 3 583 MAP Kinase Kinase Kinase AT4G35780 64.716 0.0 752
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Pumo3g00417 PK_Tyr_Ser-Thr 3.8e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00417 - - gmx:100805180 1102.81