Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00415 ATGGCGCGCGGAAGCAAGAAGCGGCATGGGAACAACACAGCCATTATTCCCGTGGATGCAAACCCCACTCAGCAAAAAACACAGTCTTTGGATACTGATTATGATGAGTGTGAGACCAAAAGGATGAAATTTACTGAGAACAATGGTGATGGAGCAGGGGGTTCTTCCTCTGTTAAAGAAATTGTGAAAAAGAAGCGTGGCAGAAAAAGTAAAAAGGAGAAGGAGGACATGCCAAAGAAGATGTTAGAGGAGAAGGATGCTCAAAACGAAAACCACGGTGAAAATGGTGGAGTAGGAGGTTCTGCTTCCGTTCAAGTAAGTGTGAAAAAGAAGCGTGGAAGAAAGAGTAAAAAGGAGAAGGAGGACATGGAAAAGAAGATGTTAGAGGAGAAAGATGCTCAAAACGAAAACCACGGTGAAAATGGTGGAGTAGGAGGTTCTTCTTCTGTTCAAGAAGGTGTAAAAAAGAAGCGTGGCAGAAAGAGTAAAAAGGAGAAGGAGGACATGGAAAGGAAGAAGATGCTAGAGGGCAATTTGTTGGAGGAGAAAGATGCTCAAGACGAAAACCACGGTGAGAATGGTGGAGTAGGAGGTTCTTCTTCTGTTCAAGAAGGTGCAAAAAAGAAGCGTGGCAGAAAGAGTAAAAAAGAGAAGGAGGACATGGAAAAGAAGAAGATGTTAGAGGGCAATTTGTTGGAGGAGAAAGATGCTCAAAACGAAAACCACAGTGAAAATGGTGGGGTAGGAGGCTCTTCTTCTGTTCTAGAAGGTGTGAAGAAGATGCGTGGCAGAAAGAGTATAAAGGAGAAGGAGGACATGAAAAGGAAGGAGATGTTAGAGGGCAATTTGTTGGAGGAGAAATATGTTCAAGACGTTAACTGTGGTGAAAATGGTGGGGTAGGAGGTTCTTCTTCTGTTCAAGAAGTTGTGAAAAAGAAGCGTGGCAGAAAGAGTATAAAGGAGAAGGAGGACATGAAAAGGCAGAAGATTTTAGAGGGCAATTTGTTGGAGAAGAAAGATGTTCAAGACGTTAATGGTGAAAATGGTGGGGTACCTGAGAAGAGGCGCGGAAGAAAAAGAAAGATGCTTAAGGAAGATGATGGTGAGTTTGAAATGCCTGAAGATTCTTCAGGAAGTGGCATTCAGAAACAATATAGTCTTAGGGCCCCTAAAGTCAATATAGAAGAGGAGATGCCAAAAATCAACAAGAGAGATCCTAAGTGGATAGAAGAGGAGTCCTTAATGTGTCATCAATGTCAGAGAAATGATAAAGGCAGGGTTGTGAGGTGCACAAAATGTAAGAGGAAAAGATTTTGCGTACACTGTATACAAAATTGGTATCCTCATTTGAAAGAGGATTATATTGCTGAGGCATGTCCTGTGTGCCGTGGTAATTGCAACTGCAAAGCATGCTTGAGATCTGATGAACTTATTAAAAAAATGAAGAAGAAAACAAAAACCATTGAAGATGAGAAGGTTGAACTCTCTATGCATTTGCTGCTAGTACTTCTTCCGTATTTAAGGCTGTTAGATGAAGAACAGATGATTGAGAATGAGACAGAAGCTAAGATACAGGGGCACTCAGTCTCAGAGTTGAATATAGTACAGGCAGATTTCTCTGAAGATGAACGTGTGTACTGTGACAACTGCAAAACGTCAATATTTGATTACCACAGAAGCTGTACAAAATGCTCTTTTGACCTTTGTCTCATCTGTTGCCGTGAGCTTCGTAACGGGCAGCTTGTAGGTGGTGCCGATCCAATTAAGTTGGAGTTTGTCTCGCAAGGTCGTCGTTACTTGCATGGTGAAAAAGAAAACAAAAGTGTAAAACAAAATGAACCAAATGCTGTTGCTAAGCCTGTTGTTCGTGAATGGTCAAGATCTGGGTGGCATGCAGAAAGTAATGGTAGCATTCCTTGTCCAAAAGTCAATGATGAATGTAACCATGGTTTTCTTGAACTGAGAAGCATATTAGGTCAACATTTTATCACTGATTTAGTGCATAAAGCAAACGAACTAGCACAAGCATACAAGCTTCAAGATGTAGTTAAGACCCCTGACAACTTCTGTTCGTGTTTGAGGCTTGATAGAAACACAGATGTTAGATATAATAATATGAGGAAGGCTGCTTCTCGTGCAGATTCCAGTGACAACTATTTATACTGTCCTAGGGCTCTAGATCTACAGCATAAGGATTTAAGGCATTTTCAGTGGCATTGGGAAAAGGGGGAGCCTGTCATTGTCAGCAATGTGCTTGAATGTACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGTCAGATGACCAAGACCAAGCATGAACAGCATTTGGATGTGAAGGCAATTGATTGCTTAGATTGGTGCGAGGGAGAAATTAATATCCACCAATTCTTTACTGGGTATACAAAAGCTCGTGAGGATTGGCTTGATTGGCCTCAAATATTGAAATTAAAAGATTGGCCTCCTTCTAATTTATTTGAGGAACGTTTGCCTCGACATTGTGCTGAGTTCATATCTTCCTTGCCCTTCAAGGAATATACTGATCCTCTCAAAGGTTCTCTTAATGTAGCTGTGAAGTTGCCTAAGGATTGTCTAAAGCCAGACATGGGGCCAAAGACATATATTGCTTATGGATTTCCTCAGGAGCTTGGGCGTGGTGATTCAGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTGAAATTGGAACCAAAGCATCTTATTGCCATTGAGAAGTTGAAACAAAAGCACTTTGAGCAAGACAAAAGGGAGCTATTTGGTGATGATCAGAATAGAGAAACTAATGTTGACAAACTCAATAATTCATCTTATACCATAAATGCTTTGGAGAAGCAAAATAGTGTCCAAGTCATAGAACACAAAGGTTTATGTGATGGGAAAGAAGTTGATCAGTTCCATCAACCCTCTGGTGGTAATGAGGTTGCCATTGCTAATGAGGATGGTCTTTCATGCGGATCAGAGCTTAAAGAGGTTGACAAAGTAAAAATAAAGCAAGAAAGTGATATGTTGTTTGCAGGGGATGGTTCAGAAGGTGCTCTCTGGGATATTTTTCGGAGGCAGGATGTACCTAAATTGCAGGAATATCTGATGAAGCATTTCAGAGAGTTCAGGCATGTCCATTGCTGTCCTTTAAAACAGGTTATTCACCCCATCCATGACCAGACCTTTTATCTGACTGTGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTATTCAGAAGGTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTATTAAGGTTGCACTGGATTTTGTCTCTCCAGAAAATGTTGGGGAGTGCTTTCGTTTGACAGAGGAATTTCGCACACTTCCAATAAACCACGGGTCTAGTGAGGACAAGTTGGAGGTGAAGAAGATGACAATATATGCTATGCAAGATGTGATCGGAAAATTGGAGGAAGCAAGGTCCGGGAAAACCAAGGTTCTGGAGTAA 3564 0.4144 MARGSKKRHGNNTAIIPVDANPTQQKTQSLDTDYDECETKRMKFTENNGDGAGGSSSVKEIVKKKRGRKSKKEKEDMPKKMLEEKDAQNENHGENGGVGGSASVQVSVKKKRGRKSKKEKEDMEKKMLEEKDAQNENHGENGGVGGSSSVQEGVKKKRGRKSKKEKEDMERKKMLEGNLLEEKDAQDENHGENGGVGGSSSVQEGAKKKRGRKSKKEKEDMEKKKMLEGNLLEEKDAQNENHSENGGVGGSSSVLEGVKKMRGRKSIKEKEDMKRKEMLEGNLLEEKYVQDVNCGENGGVGGSSSVQEVVKKKRGRKSIKEKEDMKRQKILEGNLLEKKDVQDVNGENGGVPEKRRGRKRKMLKEDDGEFEMPEDSSGSGIQKQYSLRAPKVNIEEEMPKINKRDPKWIEEESLMCHQCQRNDKGRVVRCTKCKRKRFCVHCIQNWYPHLKEDYIAEACPVCRGNCNCKACLRSDELIKKMKKKTKTIEDEKVELSMHLLLVLLPYLRLLDEEQMIENETEAKIQGHSVSELNIVQADFSEDERVYCDNCKTSIFDYHRSCTKCSFDLCLICCRELRNGQLVGGADPIKLEFVSQGRRYLHGEKENKSVKQNEPNAVAKPVVREWSRSGWHAESNGSIPCPKVNDECNHGFLELRSILGQHFITDLVHKANELAQAYKLQDVVKTPDNFCSCLRLDRNTDVRYNNMRKAASRADSSDNYLYCPRALDLQHKDLRHFQWHWEKGEPVIVSNVLECTSGLSWEPLVMWRAFRQMTKTKHEQHLDVKAIDCLDWCEGEINIHQFFTGYTKAREDWLDWPQILKLKDWPPSNLFEERLPRHCAEFISSLPFKEYTDPLKGSLNVAVKLPKDCLKPDMGPKTYIAYGFPQELGRGDSVTKLHCDMSDAVNVLTHIAEVKLEPKHLIAIEKLKQKHFEQDKRELFGDDQNRETNVDKLNNSSYTINALEKQNSVQVIEHKGLCDGKEVDQFHQPSGGNEVAIANEDGLSCGSELKEVDKVKIKQESDMLFAGDGSEGALWDIFRRQDVPKLQEYLMKHFREFRHVHCCPLKQVIHPIHDQTFYLTVEHKRKLKEEYGIEPWTFIQKVGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPINHGSSEDKLEVKKMTIYAMQDVIGKLEEARSGKTKVLE 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00415 1187 MobiDBLite consensus disorder prediction 258 274 - -
Pumo3g00415 1187 MobiDBLite consensus disorder prediction 163 190 - -
Pumo3g00415 1187 SUPERFAMILY Clavaminate synthase-like 723 1165 - -
Pumo3g00415 1187 MobiDBLite consensus disorder prediction 71 91 - -
Pumo3g00415 1187 MobiDBLite consensus disorder prediction 295 381 - -
Pumo3g00415 1187 SMART cupin_9 834 1145 IPR003347 -
Pumo3g00415 1187 MobiDBLite consensus disorder prediction 309 368 - -
Pumo3g00415 1187 ProSiteProfiles Zinc finger RING-type profile. 416 463 IPR001841 -
Pumo3g00415 1187 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 63 1180 IPR045109 GO:0032454|GO:0033169
Pumo3g00415 1187 Gene3D Cupin 720 1153 - -
Pumo3g00415 1187 MobiDBLite consensus disorder prediction 31 45 - -
Pumo3g00415 1187 Coils Coil 116 137 - -
Pumo3g00415 1187 MobiDBLite consensus disorder prediction 215 241 - -
Pumo3g00415 1187 MobiDBLite consensus disorder prediction 1 274 - -
Pumo3g00415 1187 MobiDBLite consensus disorder prediction 16 30 - -
Pumo3g00415 1187 MobiDBLite consensus disorder prediction 117 137 - -
Pumo3g00415 1187 Pfam JmjC domain, hydroxylase 1032 1128 IPR003347 -
Pumo3g00415 1187 ProSiteProfiles JmjC domain profile. 853 1145 IPR003347 -
Pumo3g00415 1187 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 411 478 IPR018866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00415 Pumo-Chr3 5892736 5909467 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo3g00415 JmjC 4.8e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00415 K15601 - gmx:100805723 1777.3