Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00411 ATGGAGAACGACACCACCACCGCCGCCGCCGCTAACAATAACACCACCACCACCGCCACCGCCAAAGCAGGTTCCGGAGGAGTGAAATCGAACAACCATAACCTAGAAGAGGAGCATTCCAATTTGAATGGCGAGGAGCACATGGCAGAACAAGTGGAGGCAGAAGAGGAAGAAGATCGAGAAGCCGATGAAGGCGAAGGTGAACCAACTGGATCTGCGGCGCCCAATCCTTGCCAACCTTCGAGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTCGCACTCGCTCGAACCCTTCAGGAGCAGGAAAGGGCATATATGATGCTGAGAATGAATAATGATGGAAGTGATTATGGAAGTTGGGAAGGCGGAAGCCATTTGCATGATGATGGGGATGATTTTGATGATCTACATGATGGCACTGATGTGGATGAGGATGATGATGACGAAGATGATGATGATGAAAATGAGGAGTATGAGGATGAAGATGCATTTGATGTCCATGCTCATGCTAGTGCTGGAGAACATGATAATCCCAGCATTGAATTTGACCCAGATGTATTTTCAAGTGATGAAGCATATGCAAGAGCATTACAAGAAGCCGAAGAGAGGGAAATGGCAGCTAGACTGTTGGCTCTTGCTGGGATAAATGATCGGGAGGTGGAGGACATAGAGGAGTATGGTGCTAATTCTCCGGATGCTTGGGAGGATGTTGATCCAGATGAACTTTCATACGAGGAATTACTGGCATTGGGTGATGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACTATTGCCTGCTTGCCTTCAGTCAACTACAAGACTGGGAGTGATCAGCATGGAAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGGTGAGTCCTTGACAGTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCAGTTTGTAGTACCGAGGTATCTGCTTCTGGGAGCAACTTGTAG 1026 0.4747 MENDTTTAAAANNNTTTTATAKAGSGGVKSNNHNLEEEHSNLNGEEHMAEQVEAEEEEDREADEGEGEPTGSAAPNPCQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSHLHDDGDDFDDLHDGTDVDEDDDDEDDDDENEEYEDEDAFDVHAHASAGEHDNPSIEFDPDVFSSDEAYARALQEAEEREMAARLLALAGINDREVEDIEEYGANSPDAWEDVDPDELSYEELLALGDVVGTESRGLSTDTIACLPSVNYKTGSDQHGSNDSCVICRVDYEDGESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00411 341 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 40 339 IPR043312 -
Pumo3g00411 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 337 IPR013083 -
Pumo3g00411 341 MobiDBLite consensus disorder prediction 123 165 - -
Pumo3g00411 341 FunFam E3 ubiquitin ligase BIG BROTHER-related 256 337 - -
Pumo3g00411 341 MobiDBLite consensus disorder prediction 137 164 - -
Pumo3g00411 341 ProSiteProfiles Zinc finger RING-type profile. 290 331 IPR001841 -
Pumo3g00411 341 MobiDBLite consensus disorder prediction 1 31 - -
Pumo3g00411 341 SMART ring_2 290 330 IPR001841 -
Pumo3g00411 341 Coils Coil 35 55 - -
Pumo3g00411 341 MobiDBLite consensus disorder prediction 32 49 - -
Pumo3g00411 341 SUPERFAMILY RING/U-box 281 335 - -
Pumo3g00411 341 MobiDBLite consensus disorder prediction 50 65 - -
Pumo3g00411 341 MobiDBLite consensus disorder prediction 74 89 - -
Pumo3g00411 341 Pfam Ring finger domain 288 330 IPR001841 -
Pumo3g00411 341 MobiDBLite consensus disorder prediction 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00411 Pumo-Chr3 5869881 5875486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00411 75 227 C3H Transcription Factor Family AT3G19910 53.548 7.55e-37 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00411 K19045 - gmx:100306465 494.582