Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00407 ATGTCTTTCGGCGGCGGCGGAGCGAAGCCGTTCTTCTGCCACATGTGCAGTCGCAGGATCACGTGCTCCGATGAGTCGGAACCCTTCTGCCCGATCTGTTTGGAAAGCTTCGTGGAAGAATGGAACCCTAACAACCCTAACCCTAGCCTTATCCCCGAGAGCGAGGAGTCTTCGGATCCCGAAATCCCCTTCCACCCCTTCTCCTTGCTCCCTCTCTTGCTCTCCTCCGTTTCCAGGACCCGACCCGAACCCGACATGTTCGACCCGATGGTCTTCCTCCACAACCACCTTCAGGACCTTCGCGCCGACGGCGCCAACATCCAAGTCGACTTCGACCACCCTTCCGAGCAAGGGTTCCGCCTCCCGGCCAACATCGGCGACTACTTCCTAGGCCCCGGCCTCGAGCAGTTGATCCAGCAGCTCGCTGACAACGACCCCAACCGCTACGGCACGCCGCCCGCCGCCAAGGACGCCGTCGAGAATCTCCCCACCATCACCGTCGACGACGAGTTGCTCAACTCGGAGCTGAACCAGTGCGCGGTCTGCCAGGACGAGTTCGAGAAGGGCTCGCAGGTGACGCAGATGCCCTGCAAGCATGCGTATCACGGCGACTGCTTGATTCCGTGGCTCCGGCTGCATAACTCTTGCCCTGTGTGTCGCTATGAATTGCCCACTGACGACGCGGATTACGAGAATCGATCGCGCGGTGAAGGCGGTGACGGTGACGGTGACGGTGGGAGCGACGGTGGCGGTGCAGGGGGAGGGGGAAGTAATAGACCCGTTCACAGGACCGTTAGAATATATTTGCGGCATCCTGATGCTGGTGGCTCTGCGCAGGACAGTGCTGGATGGGGATGGGGATGGGGAAGTTGA 873 0.6082 MSFGGGGAKPFFCHMCSRRITCSDESEPFCPICLESFVEEWNPNNPNPSLIPESEESSDPEIPFHPFSLLPLLLSSVSRTRPEPDMFDPMVFLHNHLQDLRADGANIQVDFDHPSEQGFRLPANIGDYFLGPGLEQLIQQLADNDPNRYGTPPAAKDAVENLPTITVDDELLNSELNQCAVCQDEFEKGSQVTQMPCKHAYHGDCLIPWLRLHNSCPVCRYELPTDDADYENRSRGEGGDGDGDGGSDGGGAGGGGSNRPVHRTVRIYLRHPDAGGSAQDSAGWGWGWGS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00407 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 226 IPR013083 -
Pumo3g00407 290 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Pumo3g00407 290 SUPERFAMILY RING/U-box 158 226 - -
Pumo3g00407 290 Pfam Ring finger domain 177 220 IPR001841 -
Pumo3g00407 290 FunFam E3 ubiquitin-protein ligase RING1-like 140 226 - -
Pumo3g00407 290 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 87 224 - -
Pumo3g00407 290 SMART ring_2 179 219 IPR001841 -
Pumo3g00407 290 MobiDBLite consensus disorder prediction 230 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00407 Pumo-Chr3 5836349 5839006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00407 123 235 C3H Transcription Factor Family AT5G01980 47.788 7.60e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00407 K11982 - gmx:100785289 459.144