Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00405 ATGTCGAACTCCGACGGCACCACTAACGGCGGCTCAATCATTGAGGCGCAGCAGAGACAGCAGCAGCCCTTAGCCGTTAAGAAGCCACCCTCCAAGGACCGGCACAGCAAGGTGGACGGCCGCGGCCGCCGCATAAGGATGCCAATCATATGCGCTGCACGTGTCTTCCAGCTCACGCGCGAGCTCGGCCACAAGTCCGACGGTCAAACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACCACCCCCGCCAGCTTCTCCTCCGTCTCCCTCTCCGTCCGCGGCCCAGCCTCACTCTCCTCCCCCTCCTCCGCCTCCGACCACAAGCCCCAGTTACTCGCTCCAACTCCCTTCATCCTCGGCAAGCGCATACGCACCGACGAAGACTCCTCTAAAGACGAGGCCGTTTCTGTGGGCCCCTCCCTCGTGGGCCCCTCTACCCCTCCTGGACTGTGGGCCCTCCCAGCCCGGTCCGATTTCGGACAAATTTGGAGCTTCGCTGCTCCCGAAATGGTCGTGCAGCCCGCCGCGGTGTCGCAGCAGCAGGCTTCGTTGTTCGCTCATCACCACCGTCAACAGCAGCAACAGGCCATCGGAGAAGCTTCGGCGGCGAGGGTGGGGAATTACCTTCCGGGACATCTGAATTTGCTGGCTTCGTTGTCCGGTGGGCCCGGGAATTCTGGTCGGAGAGACGATGAACCTCGTTGA 735 0.6367 MSNSDGTTNGGSIIEAQQRQQQPLAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSLSVRGPASLSSPSSASDHKPQLLAPTPFILGKRIRTDEDSSKDEAVSVGPSLVGPSTPPGLWALPARSDFGQIWSFAAPEMVVQPAAVSQQQASLFAHHHRQQQQQAIGEASAARVGNYLPGHLNLLASLSGGPGNSGRRDDEPR 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00405 244 Pfam TCP family transcription factor 31 136 IPR017887 -
Pumo3g00405 244 MobiDBLite consensus disorder prediction 94 121 - -
Pumo3g00405 244 ProSiteProfiles TCP domain profile. 31 85 IPR017887 -
Pumo3g00405 244 MobiDBLite consensus disorder prediction 1 44 - -
Pumo3g00405 244 MobiDBLite consensus disorder prediction 28 44 - -
Pumo3g00405 244 MobiDBLite consensus disorder prediction 1 25 - -
Pumo3g00405 244 MobiDBLite consensus disorder prediction 94 119 - -
Pumo3g00405 244 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 216 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00405 Pumo-Chr3 5808050 5810356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00405 8 244 TCP Transcription Factor Family AT5G23280 64.583 1.68e-95 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo3g00405 TCP 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00405 K16221 - gmx:100799005 394.045