Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00401 ATGTCTCAGACATCCAGTGTCCTGCCTGCCTTCCACTCCATCAAATCATTGCCTCCTGAGTTCAAGTTTGCTAATAATCCTAACCCTGTTCTTGTGGAAAAACATGGAGATGCTAAATTCAGACGTACCAATCCGATTGGATCATATGGTCTTGAAAATGGTGCACTGGTAGGGGAGGTTTCTAAGGTAGTGAACGGCCGTGCTCGTGGCATGGATCTTTTTGATGAGGACTCGCCGTATGGTGGAAAAGGTAGATCATTAAAAGACCGGCCGTCTAATGCAGATGAAGACTCAGTATCTGTTTCGTTGCCCCTCCCATCGATTTTGGCATCCTCTAGGGAAAGCAGGTGGAATGATACAAATCCTTATGGTTCAAAAAAGAAGCTTCAGTCTTGGCTTCAACTACCAAATGGGGATTGGGAGCTGGTAAAGATAATAACAACTTCTGGAGCTGAATCTGTCATTTCACTGCCTGATGGGAAAGTTTTAAAGGTGAAAGAGGAGAGTTTGGTGCCAGCTAATCCTGATATTCTTGATGGAGTGGATGACCTCATGCAACTAAGTTATTTAAATGAACCATCAGTTTTATTCAACCTGCAATATAGATACAATCAAAACATGATCTATACGAAAGCTGGGCCTGTATTGGTTGCTGTAAATCCCTTTAAGAAAGTTCCTCTGTATGGTAATGACTATATTGAAGCCTACAAGTGTAAAGCAATTGAAAGCCCTCATGTATATGCAATTACTGACACTGCCATCCGAGAAATGATACGAGACGAAGTGAATCAATCTATAATTATAAGTGGTGAGAGTGGAGCAGGGAAGACTGAGACAGCAAAAATAGCAATGCAGTACTTGGCTGCCCTTGGTGGTGGAAGTGGAATAGAGAATGAGATATTAAAGACTAATCCAATACTAGAAGCCTTTGGTAATGGAAAAACATTAAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATATCCGGTGCTAATATTCAAACATTTTTGCTGGAAAAGTCTAGAGTAGTCCAATGCAATGAAGGGGAAAGGTCATATCATATATTTTATCAGCTATGTGCTGGAGCACCATCATCTCTTAGGGAGAAGCTAAATCTACTAAGTGCGGAAGACTATAAATACCTGAGGCAGAGCAATTGTTATTCAATTACCGGTGTTGATGATGCAGAAGAATTTCGCATAGTCAAGGAAGCTCTGGATGTTGTCCACATTAGCAAAGGAGACCAGGAGAATGTATTTGCAATGCTTGCTGCAGTATTATGGTTAGGAAACATATCATTTACTGTGGTCGATAATGAAAATCATGTTCAAGCAGTTGAGGATGAGGGTCTGTTCACTGTTGCTAAGTTGATTGGATGTGAAATTGAAGACCTGAAGTTGACTTTATCAACTCGCAATATGAAAGTTGGTAATGATAATATTGTCCAGAAGTTGACACTATCTCAGGCTATTGATGCGAGAGATGCTTTGGCGAAGTCAATATATGCATGTCTGTTTGATTGGTTGGTTGAACAAATAAACAAATCCCTTGCGGTTGGCAAAAGACGAACTGGCAGATCAATCAGCATTCTGGATATTTATGGCTTTGAGTCATTCAATAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCAAATGAGAGATTACAGCAACACTTCAATCGTCATTTATTCAAGTTAGAACAGGAGGAATATATCCAAGATGGCATTGATTGGGCTAAAGTTGAATTTGAAGACAATCAAGATTGCCTTAATCTTTTTGAAAAGAAACCATTGGGGCTACTGTCCCTGTTAGATGAAGAGTCAACTTTCCCTAATGGCACAGATTTAACGTTTGCTAACAAGCTTAAGCAGCATTTGAATTCCAATTCATGCTTCAAAGGAGAACGAGAAAAAGCCTTTACTGTGCGTCATTATGCAGGGGAGGTCACTTATGATACATCTGGATTCCTGGAAAAGAACAGGGACCTATTGCACTTGGACTCCATCCAACTTCTATCCTCAAGCAAATGTCATTTTCCTAAGTTATTTGCATCCCATATGCTAACTCAGTCTGAGAAGCCTGTAGTAGGTCCCTTACACAAGTCAGGTGGGGCAGATTCCCAAAAGCTAAGTGTTGCCACAAAATTCAAGGGACAATTGTTCCAATTGATGCAACGTTTAGAGAGTACCACACCACATTTTATACGCTGCATTAAGCCCAATAACCTCCAATCACCTGGATCATATGAGCAAAGCCTTGTACTGCAGCAGTTGAGATGTTGTGGGGTCCTGGAAGTGGTTCGAATATCAAGATCGGGCTTTCCAACTAGAGTATCTCACCAAAAGTTTGCCAGAAGATATGGTTTCCTTCTCCTTGAAAATGTTGCCTCTCAGGATCCACTTAGTGTTTCAGTTGCTATTCTTCATCAGTTCAACATTTTGCCTGAGATGTTTCAAGTTGGCTACACAAAACTATTCTTCCGAACAGGGCAGATTGGAGTGCTTGAAGATACCAGAAATCGTACCCTGCATGGAATTTTACGTGTGCAAAGTTGCTTCAGGGGTTACCGAGCTCGTTGTTATCGCAAGGAGCTTCGGAGAGGAATCACTACTCTCCAATCTTGTATTTCCTTTTTCTCACCTAATTCTTTAAGCCTATCACATTCCTTGAGAAGTGTAACCAACTCACATTATTTTTTACCCGTTCATGCAGTCATTAGAGGAGACAAAAGCAGAAAGGAATATGCAGCTTTGCTTCAGAGACATAGGGCTGCTGTTATTATACAGAAGCGGATGAAAACAGTACTTGCAAGGAACAGAAATAAAAGTATTAATGATGCTGCAGTTGTCATACAATCATTTATTCGTGGTTGGTTAGTCAGAAGATGCTCAGGAGATATAGGATTATCAAAAGCCCAAGGCGTGAAGACGAATGAGTCAGATGAGGTTCTGGTGAAGTCGTCTTTCCTGGCTGAATTACAGCGCCGGGTACTTAAGGCAGAAGCTGCCCTGAGAGAGAAAGAAGAGGAAAATGACATTCTTCACCAACGCCTTCAACAGTATGAGAGCAGATGGTCTGAATATGAATTGAAGATGAAGTCCATGGAAGAAGTATGGCAGAAACAAATGAGATCCCTACAATCTAGCCTCTCCATTGCAAAGAAGAGCCTTGCTATGGATGATTCTGAAAGAAATTCAGATGCTTCTGTTAATGCAAGTGATGACAGGGATTTCAGCTGGGATGTAGGAACCAATCACCGGCGCCAAGAAAGCAATGGGGCAAGATCAATGAGTGCTGGTTTGAGTGTTATAAGTCGGTTGGCGGAAGAATTTGAGCAGAGGAGTCAAGTGTTTGGTGATGATGCTAAATTCTTGGTAGAGGTAAAATCTGGTCAAGTTGAAGCCAGTTTGAACCCAGATAGAGAGCTTAGAAGGTTAAAACAGATGTTTGAAGCTTGGAAAAAGGATTATGGTGCTAGACTACGTGAAACAAAGGTCATTTTACATAAACTTGGAAGTGAAGATGGATCAATTGAGAAAGTGAAGAAAAGTTGGTGGGGAAGAAGGAATAGTACAAGAATAAGTTGA 3621 0.4082 MSQTSSVLPAFHSIKSLPPEFKFANNPNPVLVEKHGDAKFRRTNPIGSYGLENGALVGEVSKVVNGRARGMDLFDEDSPYGGKGRSLKDRPSNADEDSVSVSLPLPSILASSRESRWNDTNPYGSKKKLQSWLQLPNGDWELVKIITTSGAESVISLPDGKVLKVKEESLVPANPDILDGVDDLMQLSYLNEPSVLFNLQYRYNQNMIYTKAGPVLVAVNPFKKVPLYGNDYIEAYKCKAIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIENEILKTNPILEAFGNGKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGAPSSLREKLNLLSAEDYKYLRQSNCYSITGVDDAEEFRIVKEALDVVHISKGDQENVFAMLAAVLWLGNISFTVVDNENHVQAVEDEGLFTVAKLIGCEIEDLKLTLSTRNMKVGNDNIVQKLTLSQAIDARDALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFKGEREKAFTVRHYAGEVTYDTSGFLEKNRDLLHLDSIQLLSSSKCHFPKLFASHMLTQSEKPVVGPLHKSGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPGSYEQSLVLQQLRCCGVLEVVRISRSGFPTRVSHQKFARRYGFLLLENVASQDPLSVSVAILHQFNILPEMFQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGYRARCYRKELRRGITTLQSCISFFSPNSLSLSHSLRSVTNSHYFLPVHAVIRGDKSRKEYAALLQRHRAAVIIQKRMKTVLARNRNKSINDAAVVIQSFIRGWLVRRCSGDIGLSKAQGVKTNESDEVLVKSSFLAELQRRVLKAEAALREKEEENDILHQRLQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAMDDSERNSDASVNASDDRDFSWDVGTNHRRQESNGARSMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLNPDRELRRLKQMFEAWKKDYGARLRETKVILHKLGSEDGSIEKVKKSWWGRRNSTRIS 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00401 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 922 973 IPR027417 -
Pumo3g00401 1206 MobiDBLite consensus disorder prediction 1068 1082 - -
Pumo3g00401 1206 MobiDBLite consensus disorder prediction 1068 1087 - -
Pumo3g00401 1206 FunFam Myosin heavy chain 361 417 - -
Pumo3g00401 1206 Gene3D Kinesin motor domain 182 780 IPR036961 -
Pumo3g00401 1206 ProSiteProfiles Myosin motor domain profile. 179 851 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g00401 1206 Gene3D - 931 975 - -
Pumo3g00401 1206 Gene3D - 361 420 - -
Pumo3g00401 1206 SMART MYSc_2a 173 852 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g00401 1206 SMART iq_5 954 976 IPR000048 GO:0005515
Pumo3g00401 1206 SMART iq_5 852 874 IPR000048 GO:0005515
Pumo3g00401 1206 SMART iq_5 931 953 IPR000048 GO:0005515
Pumo3g00401 1206 PRINTS Myosin heavy chain signature 537 565 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g00401 1206 PRINTS Myosin heavy chain signature 590 618 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g00401 1206 PRINTS Myosin heavy chain signature 209 228 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g00401 1206 PRINTS Myosin heavy chain signature 305 332 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g00401 1206 PRINTS Myosin heavy chain signature 263 288 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g00401 1206 Pfam IQ calmodulin-binding motif 957 973 IPR000048 GO:0005515
Pumo3g00401 1206 Pfam IQ calmodulin-binding motif 857 872 IPR000048 GO:0005515
Pumo3g00401 1206 ProSiteProfiles IQ motif profile. 955 984 IPR000048 GO:0005515
Pumo3g00401 1206 MobiDBLite consensus disorder prediction 71 100 - -
Pumo3g00401 1206 MobiDBLite consensus disorder prediction 71 95 - -
Pumo3g00401 1206 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 126 175 IPR004009 GO:0003774|GO:0005524|GO:0016459
Pumo3g00401 1206 ProSiteProfiles IQ motif profile. 855 882 IPR000048 GO:0005515
Pumo3g00401 1206 PANTHER MYOSIN 172 1198 - -
Pumo3g00401 1206 Gene3D Myosin VI head, motor domain, U50 subdomain 422 719 - -
Pumo3g00401 1206 Coils Coil 1001 1049 - -
Pumo3g00401 1206 CDD MYSc_Myo8 193 839 IPR036022 -
Pumo3g00401 1206 Gene3D - 547 741 - -
Pumo3g00401 1206 Pfam Myosin head (motor domain) 181 839 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pumo3g00401 1206 FunFam Unconventional myosin-XIX 549 741 - -
Pumo3g00401 1206 Gene3D - 784 891 - -
Pumo3g00401 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 887 IPR027417 -
Pumo3g00401 1206 ProSiteProfiles IQ motif profile. 906 935 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00401 Pumo-Chr3 5771767 5783897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00401 7 1204 Myosins gene family AT1G50360 74.314 0.0 1795
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00401 - - gmx:100801124 2210.65