Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00394 ATGTTGATCCATAGAGATGTGAAATCAAGCAATATTCTTATTGATGGTGACTTCAATGCTCGTTTGGGTGATTTTGGACTAGCAAGGGTTTATAGCCATGATCAAGTGTCACACACAACAAGGGTGGTTGGCACCATTGGGTATATTGCACCAGAGTTAACTAGAACAGGAAAAGCATCTACAAGCTCTGATGTGTATGCATTTGGGGTCCTAATCCTTGAAGTGGTTGCTGGCACAAGACCTGTTGGCTCATCAGGTCAGTTTTTGTTGGTGGATTGGGTTCTTGAAAATTGCCAACTGGGTCAGATTCTTGAAGTGGTTGATCCTAAGCTAGGTTCAGTTTATGATGAGGAGGAAGTGGAGTTGGTACTGAAATTGGGTCTCTTGTGTGCTCAATACAAAGCTGATTATAGACCTTCCATGAAACAAGTGACTAGGTACCTAAACTTGGATGACCCTCTTCCTGATATCTCTGATTGGAGACACTATGATTCTCAAAGCAGCACATCAAGCTTAGGTTTCTTGGAAGCCATGTCTACGGGTAAGACTGCATCTTCGTGCAGTTTATCCTCCATTGGAAGAAGTACAATGCCAATAAAAACTGGTAGATAG 612 0.4232 MLIHRDVKSSNILIDGDFNARLGDFGLARVYSHDQVSHTTRVVGTIGYIAPELTRTGKASTSSDVYAFGVLILEVVAGTRPVGSSGQFLLVDWVLENCQLGQILEVVDPKLGSVYDEEEVELVLKLGLLCAQYKADYRPSMKQVTRYLNLDDPLPDISDWRHYDSQSSTSSLGFLEAMSTGKTASSCSLSSIGRSTMPIKTGR 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00394 203 SUPERFAMILY Protein kinase-like (PK-like) 2 155 IPR011009 -
Pumo3g00394 203 Pfam Protein kinase domain 2 144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00394 203 ProSitePatterns Serine/Threonine protein kinases active-site signature. 2 14 IPR008271 GO:0004672|GO:0006468
Pumo3g00394 203 FunFam L-type lectin-domain containing receptor kinase S.4 1 161 - -
Pumo3g00394 203 Gene3D Transferase(Phosphotransferase) domain 1 1 162 - -
Pumo3g00394 203 SMART serkin_6 1 148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00394 203 ProSiteProfiles Protein kinase domain profile. 1 150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00394 203 PANTHER - 2 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00394 Pumo-Chr3 5748326 5748937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00394 1 165 Receptor kinase-like Gene Family AT5G01560 56.627 1.27e-58 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Pumo3g00394 Pkinase 6.7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00394 - - gmx:100792854 356.295