Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00378 ATGGAAGAGATGTCGGGTTCAGCAACAGCAATAAACTCTTCCAATATAGGATTTCAGCTATTGAAGAAGCAAGGGTGGAAAGAAGGGACTGGTCTTGGAATATCTGAGCAGGGTAGGTTAGAACCTGTGGAAACTTATGTAAAGAATAATAAACGAGGTTTGGGAGCAGATAAAGTGAAGAAAAAGGTTGTGAAAGTGAAACCTGATCAAAGTGATTCCTCTAAAGGGAACAATCAACAGGATCAATTACCTCAAAAGAAAACCAAAACACTTTCTAAACGGATGAGAAAGATGCAGGAGTTTGAAAAGAAGATGCAAGAGAAGGAATTTGAGCGCGCTTTCTTCCGAGAGTTCTGGCCAGAAAATGTGTAA 372 0.3978 MEEMSGSATAINSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETYVKNNKRGLGADKVKKKVVKVKPDQSDSSKGNNQQDQLPQKKTKTLSKRMRKMQEFEKKMQEKEFERAFFREFWPENV 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00378 123 ProSiteProfiles G-patch domain profile. 13 59 IPR000467 GO:0003676
Pumo3g00378 123 PANTHER BAT4 PROTEIN-RELATED 3 123 IPR039146 -
Pumo3g00378 123 MobiDBLite consensus disorder prediction 70 86 - -
Pumo3g00378 123 MobiDBLite consensus disorder prediction 57 103 - -
Pumo3g00378 123 SMART G-patch_5 11 57 IPR000467 GO:0003676
Pumo3g00378 123 Pfam G-patch domain 14 56 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00378 Pumo-Chr3 5441835 5444698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00378 11 55 C2H2 Transcription Factor Family AT5G26610 53.333 5.52e-10 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00378 - - gmx:100812494 192.971