Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00369 ATGGTGAACGTGGTGGAATTGCAGAAACAGTTGCAGAGGTGGCAGCAGAGTGGGAATGTCAATGTTGATGCCAATGGAGAACTCATGTATGTCAAGGTCATGACTGATGAACAGTTGGAAACTCTGAGGAAGCAAATTGCAGTTTATGGCACCATTTGTGAGCAACTTATTGAGATGCACAGAACACTCTCAGCTCAACAGGATCTTGCAGGGGTTAGATTGGGAAACATATACTGTGACCCATTGATGACATCTGGTGGGCACAAAATAACATCAAGACAAAGGTGGACACCTACACCTGTGCAGCTACAAATTCTTGAACGTATATTTGATCAGGGAAATGGAACTCCAAGCAAGGAAAAAATCAAGGAGATTACTGCTGAACTGGGCCAGCATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAGAATAGGCGTGCTCGATCCAAAAGAAAACTGCAAAATGTGGCTCCTAGCAACACTGAATCAGAAGTGGACACTGAGGTTGATTCTAAGGATAAGAAGACAAAACCTGAGGAGTTTCAGTCCCAACATAACATCATAACTTCTTCTGGAGGGGCTGAAAAGTTGTGCTTCCAGAACCCTCAAGTATACTCTGACTTGCAGTACTTGAACCCTGATTCTACCAAACCATATAATTCCATGTTCCCATCAGATGGCAGTCTCAAATCCACAAGAAATTTGAGTCATGTGTCTGTTTTTAATGAGGTGCTGTCAAACTCAAGGAGTGAGTATGTAGGTGGAAAAATGGAAGTTACTGGGACTGTGAGCTACAATTTATTCCACCAAACAGGAGATTGCAATCTGGCGAGTTGA 843 0.4247 MVNVVELQKQLQRWQQSGNVNVDANGELMYVKVMTDEQLETLRKQIAVYGTICEQLIEMHRTLSAQQDLAGVRLGNIYCDPLMTSGGHKITSRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEITAELGQHGQISETNVYNWFQNRRARSKRKLQNVAPSNTESEVDTEVDSKDKKTKPEEFQSQHNIITSSGGAEKLCFQNPQVYSDLQYLNPDSTKPYNSMFPSDGSLKSTRNLSHVSVFNEVLSNSRSEYVGGKMEVTGTVSYNLFHQTGDCNLAS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00369 280 PANTHER WUSCHEL-RELATED HOMEOBOX 13 15 269 IPR044559 GO:0003700
Pumo3g00369 280 Pfam Homeodomain 93 153 IPR001356 GO:0003677
Pumo3g00369 280 ProSiteProfiles 'Homeobox' domain profile. 89 154 IPR001356 GO:0003677
Pumo3g00369 280 CDD homeodomain 93 154 IPR001356 GO:0003677
Pumo3g00369 280 Gene3D - 95 159 - -
Pumo3g00369 280 MobiDBLite consensus disorder prediction 152 183 - -
Pumo3g00369 280 SUPERFAMILY Homeodomain-like 91 155 IPR009057 -
Pumo3g00369 280 SMART HOX_1 91 158 IPR001356 GO:0003677
Pumo3g00369 280 MobiDBLite consensus disorder prediction 167 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00369 Pumo-Chr3 5378981 5381666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00369 29 279 Wox Gene Family AT4G35550 51.866 5.39e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pumo3g00369 Homeodomain 8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00369 - - gmx:100817342 506.523