Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00366 ATGATGAAGAGAGAAAGAGAAGTTGATAGCATAACCATGGCCAACTACTTGATGCTGCTTTCTGGAAGCACCAACTTGAACACTTCCAACAACAACCGTGTGTTTGAGTGCAAGACATGTAACCGGCAGTTCCCGTCGTTTCAGGCATTGGGAGGCCACCGTGCGAGTCACAAGAAGCCAAGGTTGATGGGAGAGAGTGATAGCCAAGTGCTTCAAGGTTCACCACCAAAGCCTAAAACACACGAGTGTTCCATTTGTGGATTGGAGTTTGCGATAGGACAAGCTTTGGGAGGACACATGAGACGCCATAGAGCAGCAGCAGCATCAAATGGAAACATGCTGCACACTAGTAATTCTTTGATGAGTTCTAGCAGCAGTGGTGGTAGTACTGTAATTGATAATACTTTACCACCAAACACCAAGAGAGTTTTGTTTCCTGATTTGAATTTGACGCCTTTAGAAAATGATTTGGAGTTTTTGAAGATTCGACAAGCAACTCCTTTGGTTCACTGCTTCAATTGA 522 0.4425 MMKREREVDSITMANYLMLLSGSTNLNTSNNNRVFECKTCNRQFPSFQALGGHRASHKKPRLMGESDSQVLQGSPPKPKTHECSICGLEFAIGQALGGHMRRHRAAAASNGNMLHTSNSLMSSSSSGGSTVIDNTLPPNTKRVLFPDLNLTPLENDLEFLKIRQATPLVHCFN 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00366 173 SUPERFAMILY beta-beta-alpha zinc fingers 33 103 IPR036236 -
Pumo3g00366 173 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Pumo3g00366 173 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Pumo3g00366 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Pumo3g00366 173 Gene3D Classic Zinc Finger 20 106 - -
Pumo3g00366 173 SMART c2h2final6 81 103 IPR013087 -
Pumo3g00366 173 SMART c2h2final6 35 57 IPR013087 -
Pumo3g00366 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Pumo3g00366 173 MobiDBLite consensus disorder prediction 51 78 - -
Pumo3g00366 173 Pfam C2H2-type zinc finger 81 105 - -
Pumo3g00366 173 Pfam C2H2-type zinc finger 34 60 - -
Pumo3g00366 173 PANTHER ZINC FINGER PROTEIN ZAT5 11 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00366 Pumo-Chr3 5345601 5346362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00366 13 156 C2H2 Transcription Factor Family AT2G28710 49.669 3.02e-36 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g00366 zf-C2H2_6 8.5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00366 - - gmx:100816598 249.21