Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00363 ATGGTTCTATCAAACAAGAAACTGAAGCTTAAACTGAGAGCTGAATTAGCCCAACAACAAAACCAAAGCAACTCCAACGCCGCTGAAGCCCCCTCATCTTCTAACTCTCTCAAAACACTTTTGGACTCTGCCACACCCACACCCACACCCACACCCAGATTGTCCAAGAGAGAGAAACGCCGAAAGCTTCGATCCGCGCAACCCCCTCTCCCTCCACAACAAGCCAACAAGGAAAGTGAGACACAAGATTCGGCCAATAAGAAAAACAAAAAGAGAAAGAGGAAGGAAGAGGATGATGACGTGGCTAATGGAGTTGCCGACACACCAAAGAACAACAACAAGAAGCAGAAGCAGAAGAAAAAGAACAAGAACAAGAACAAGAAAGCCAGAACGGCGGAAGAAAACGGTTCTAATAGTGGAGGGGAAATGCCAGAGTTAACCAAGTCCAATACAACTACCAGTCAAGACAAGGACAATGGTGATGTTCCTACAAAGGTTTATGTTGGAGGAATTCCCTATTATTCAACTGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATAACTGAAGTTGATTGCATGACATTTCCTGAAACTGGCAAGTTTAGAGGGATTGCCATTATTAGTTTCAAGACTGAAGCAGCAGCCAAAAGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAGCAACTCGAGCCAATAAAGCATCAGATTTTGCTCCAGAAATTTTGGAGGGGTACAATAGAATATATGTTGGAAATTTGTCGTGGGATATAACAGAGGAAGAACTGAGGAAATTCTTCAAAAATTGTGAGATAACGTCGCTACGATTCGGTATGGACAAGGAGACGGGAGAATTTCGAGGGTATGCCCATGTGGATTTCAGTGATAGTCAGTCACTGAAAACAGCACTTACATTGGACCAAATTGTTTTGTTTGGGAGACCTGTCAAGATAAGTTGTGCAGTTCCTTTGAAGAAAAAACCAGGAACACATACAAGCTCTGTGTCCACAGTTAATGGAGCTGATGGTGATAAATCAAGTTCCACAGGAAGTGGCAAGATGAATGGAGCTGAGGGTGATAAATCAAGTTCCACAGGAAGTGGGAAGATGAGGAGGAGGACATGCTATGAGTGTGGTGAGAAAGGACATATTCTTTCAGCATGCCCAAAGAAACAAACAGTTGCTGCGACTACAACCTAA 1236 0.4312 MVLSNKKLKLKLRAELAQQQNQSNSNAAEAPSSSNSLKTLLDSATPTPTPTPRLSKREKRRKLRSAQPPLPPQQANKESETQDSANKKNKKRKRKEEDDDVANGVADTPKNNNKKQKQKKKNKNKNKKARTAEENGSNSGGEMPELTKSNTTTSQDKDNGDVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMTFPETGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKATRANKASDFAPEILEGYNRIYVGNLSWDITEEELRKFFKNCEITSLRFGMDKETGEFRGYAHVDFSDSQSLKTALTLDQIVLFGRPVKISCAVPLKKKPGTHTSSVSTVNGADGDKSSSTGSGKMNGAEGDKSSSTGSGKMRRRTCYECGEKGHILSACPKKQTVAATTT 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00363 411 Pfam Zinc knuckle 385 402 IPR001878 GO:0003676|GO:0008270
Pumo3g00363 411 ProSiteProfiles Zinc finger CCHC-type profile. 387 402 IPR001878 GO:0003676|GO:0008270
Pumo3g00363 411 MobiDBLite consensus disorder prediction 340 384 - -
Pumo3g00363 411 MobiDBLite consensus disorder prediction 15 52 - -
Pumo3g00363 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 241 IPR000504 GO:0003723
Pumo3g00363 411 SUPERFAMILY RNA-binding domain, RBD 252 360 IPR035979 GO:0003676
Pumo3g00363 411 SUPERFAMILY RNA-binding domain, RBD 154 245 IPR035979 GO:0003676
Pumo3g00363 411 MobiDBLite consensus disorder prediction 81 104 - -
Pumo3g00363 411 Gene3D - 358 410 - -
Pumo3g00363 411 MobiDBLite consensus disorder prediction 14 163 - -
Pumo3g00363 411 SUPERFAMILY Retrovirus zinc finger-like domains 372 405 IPR036875 GO:0003676|GO:0008270
Pumo3g00363 411 SMART rrm1_1 165 237 IPR000504 GO:0003723
Pumo3g00363 411 SMART rrm1_1 260 331 IPR000504 GO:0003723
Pumo3g00363 411 MobiDBLite consensus disorder prediction 133 160 - -
Pumo3g00363 411 Gene3D - 255 342 IPR012677 -
Pumo3g00363 411 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 76 238 - -
Pumo3g00363 411 MobiDBLite consensus disorder prediction 341 382 - -
Pumo3g00363 411 SMART c2hcfinal6 386 402 IPR001878 GO:0003676|GO:0008270
Pumo3g00363 411 CDD RRM1_PHIP1 166 237 IPR034361 -
Pumo3g00363 411 Gene3D - 100 237 IPR012677 -
Pumo3g00363 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 335 IPR000504 GO:0003723
Pumo3g00363 411 Coils Coil 110 135 - -
Pumo3g00363 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 232 IPR000504 GO:0003723
Pumo3g00363 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 261 328 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00363 Pumo-Chr3 5283172 5285187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00363 164 363 Eukaryotic Initiation Factors Gene Family AT2G36660 27.962 2.84e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00363 - - gmx:100817668 572.392