Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00347 ATGGCGGGGATGCAGATGATGCTACCATACTGCGACGTCGATTCCAGCTTGAGAGCCATGGCCGGTCGCGCCGAGGGTTTCGGCTGCCTCGCCATCGGTGGCCTCCACGGTCCTCTCTATTTCGTCACCACTCTGGCAGATGATGGTCCTGGGTCCCTTCGCGAAGGATGTCGTAGAAAGGAACCGTTGTGGATTGTGTTTGAGGTTTCGGGTACCATTAATCTCTCATCGTACCTCAGTGTGTCGTCATATAAGACAATTGATGGCAGAGGGCAGAGGATCAAATTCACTGGGAAGGGTTTGAGGCTCAAAGAATGTGAACACATAATCATATGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTCGATGGCATTCAAATCAAACCAAATTCTAGGCATATATGGATTGATCGATGCAGCCTTCGCGATTACGATGATGGCCTCATAGACATTACAAGACAAAGCACCGATATCACTGTATCTAGGTGTTACTTTGCGCAGCATGACAAGACCATGCTCATTGGAGCTGACCCGACTCATGTTGGTGATAGATGTATCCGGGTGACCATTCACCATTGTTTCTTTGATGGAACACGGCAAAGACAACCTCGCGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGGATATATGCTGTTTGTGCTAGCGTGGAATCCCAGATATACTCTCAATGTAACGTATATGAAGCAGGAACCAGGAAAAAGACTTTTGAATTTTATACTGAGAAGGCGGCAGATAAAGAAGAGCAGAAGTCTGGCTTCATAATATCAGAAGGAGACATGTTTCTGAATGGTGCTGAGCCATGCTTGCTTAGAGAAAACAGAGAAGAGTCCATGTTTCATCCTAGTGAATATTACCCAACATGGACTATGGAAGCAGCTGCACATTCTCTCAGAGAGGTCCTCCAGTTATGTACAGGTTGGCAATCCATTTGTAGGCCAGTAGAAAATATGGTCCTTCAGTAA 1008 0.4623 MAGMQMMLPYCDVDSSLRAMAGRAEGFGCLAIGGLHGPLYFVTTLADDGPGSLREGCRRKEPLWIVFEVSGTINLSSYLSVSSYKTIDGRGQRIKFTGKGLRLKECEHIIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNVYEAGTRKKTFEFYTEKAADKEEQKSGFIISEGDMFLNGAEPCLLRENREESMFHPSEYYPTWTMEAAAHSLREVLQLCTGWQSICRPVENMVLQ 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00347 335 Pfam Pectate lyase 79 241 IPR002022 -
Pumo3g00347 335 SMART amb_all 50 248 IPR002022 -
Pumo3g00347 335 PRINTS Pollen allergen Amb family signature 203 222 IPR018082 -
Pumo3g00347 335 PRINTS Pollen allergen Amb family signature 23 40 IPR018082 -
Pumo3g00347 335 PRINTS Pollen allergen Amb family signature 225 244 IPR018082 -
Pumo3g00347 335 Gene3D - 10 317 IPR012334 -
Pumo3g00347 335 SUPERFAMILY Pectin lyase-like 21 302 IPR011050 -
Pumo3g00347 335 PANTHER PECTATE LYASE 18-RELATED 13 289 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00347 Pumo-Chr3 4975169 4977467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00347 45 333 Polysaccharide Lyase AT3G55140 80.969 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00347 K01728 - gmx:100802068 657.521