Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00331 ATGCCATTTCGAGCTCGCACTGCAACTGAAAGTCTCTGGTGGTCTTTGCACACCGTTTTCAACACTCACCACCCTCACTGTCTTCCCATTCACCGCAACTTCTATTCTTTGGCTTTGTCAAAACCTCAGTTTTCTGGCAATTGCGACGAATTTTTGCCCTGGTTGGAGCGGAAAGCTGGTTCTAGGATTTCGTCCTCACTTTTCATTGGCAATTCTTCGCATGGAAGGTCTTTGTTTGCTTCTAAGACAATACAAACTGGAGATTGCATTTTAAAGGTTCCTTACAGAGTGCAAATAACTGCAGATAATCTCCTTCCCGAAATCAGATCTTTGATTGTTGAGGAAGTTGGAAATATTGCGAAACTTGCTATTGTTATTCTGATTGAGAAGAAATTGGGTCAGGGCTCTGAGTGGTATCCTTACATCAACTGTCTTCCACAAGGAGAGCTGCATAATACGGTATTTTGGACTGAAAGTGAGTTGGAGATGATTTGTCCAAGTTCAGTTTATCAGGAAACTATTGACCAAAAATCTCAAATTGAAAAGGACTTTTTGGCAATCAAGCCTGTTTTTGAAGCTTTCCATCAAAGTTTTGGAGATTTTACTTACAAGGACTTCATGCATGCATGCACACTAGTTGGTTCTCGAGCATGGGGAAGCACAAATGGTTTAGCTCTGATTCCATTTGCAGATTTCTTAAACCACGATGGAGTTTCAGAAGCAATTGTAATGAGCGATGATGACAAACAATGCTCAGAAATTATTGCTGATCGTGACTATGCCCCTGGTGAACAGGTACTAATAAGATATGGAAAGTTTTCAAATGCTACATTAATGCTGGACTTTGGTTTTACAATTCCATACAACATTTACGATCAGGTTCAGATCCAGTTTGATATTCCTAAGCATGATCCTCTGCATGACATGAAGTTGGAACTCTTGCATCAGTACTTTGTACCTCCACCTGAAGATATGAAGGGCTTGTCACATCCCGTGAATTCCTTTAGTATCAAGGAGGTGAAGTCTGATAGAGGAAAGGGGAAGGGTCTTCCACAATCACTTCGTGCACTTGCTCGTGTTCTTACTTGTACCACATCTCAGGAACTTGACGATTTGGTCGTGGAAGCTGCTCAAACTGATGGTAGGCTGGCTAGGCGCCCTTTACAGGATATCAGCAAAGAGATACAAGCACACATGATGTTGTTGCCATTATTCATCCAATTAATTGAGGAGCGCAATGCCACTATTATGTCACTGGATTCTTCCTATTCTCCCTCCTTGTGTGAAAGACTATCTGTTAGAAGACTAATGGCTCAAGATCTCCTACATGGTGAGCTTCGCATTCTCAAATCTGCTTCTGCCTGGCTGGAGAACTACTGTTTTTCCTTGACTTGA 1395 0.4179 MPFRARTATESLWWSLHTVFNTHHPHCLPIHRNFYSLALSKPQFSGNCDEFLPWLERKAGSRISSSLFIGNSSHGRSLFASKTIQTGDCILKVPYRVQITADNLLPEIRSLIVEEVGNIAKLAIVILIEKKLGQGSEWYPYINCLPQGELHNTVFWTESELEMICPSSVYQETIDQKSQIEKDFLAIKPVFEAFHQSFGDFTYKDFMHACTLVGSRAWGSTNGLALIPFADFLNHDGVSEAIVMSDDDKQCSEIIADRDYAPGEQVLIRYGKFSNATLMLDFGFTIPYNIYDQVQIQFDIPKHDPLHDMKLELLHQYFVPPPEDMKGLSHPVNSFSIKEVKSDRGKGKGLPQSLRALARVLTCTTSQELDDLVVEAAQTDGRLARRPLQDISKEIQAHMMLLPLFIQLIEERNATIMSLDSSYSPSLCERLSVRRLMAQDLLHGELRILKSASAWLENYCFSLT 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00331 464 Pfam Rubisco LSMT substrate-binding 302 449 IPR015353 -
Pumo3g00331 464 FunFam Predicted protein 287 462 - -
Pumo3g00331 464 Gene3D - 287 459 IPR036464 -
Pumo3g00331 464 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 44 284 - -
Pumo3g00331 464 Gene3D set domain protein methyltransferase, domain 1 44 284 - -
Pumo3g00331 464 Pfam SET domain 75 271 IPR001214 GO:0005515
Pumo3g00331 464 SUPERFAMILY SET domain 47 289 IPR046341 -
Pumo3g00331 464 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 48 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00331 Pumo-Chr3 4780741 4787498 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo3g00331 SET 5.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00331 K19199 - gmx:100818002 811.216