Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00317 ATGGCATCAACATCTTGCGTTGGTAACAGCTCATTACCCATGAAAGATGCAGCTTCGAGCTATCGTCCATATCCTCTTCCTCTTGCAAAATATGAGGAGGTTATGGACAATCCCCAGCTCTTCATGTTTACCTTGGAGAAACTTCACGCTGCTATGGGTACCAAGTTCATGATTCCCATTGTTGGAGGAAGAGAACTAGATTTGCATCGCCTCTTTGTTGAAGTGACTTCCCGCGGAGGGATTGCAAAAATAATTAGAGAGAGGAAATGGAAAGACGTAACTTCAGTCTTCAATTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTACTATGCTTCATTGCTCTGCCATTATGAACAAATCTACTATTTTAAAGCCCGTGAATGGGACCCTACTGCTCCTGAAGTTTTGCAGAATCAATCAACCCTGCCAGTTCCTCCTCCAAAAATTCAGTTTCCGCAGCCTTTGTCAGAAATTCAACCAACTGTCTTTCATCAGTCAAATGTTAATGCTGCTAAATTGCCTGAAGCAATGGCAACATCTTCAGCCGGGTCTCCAGTCATTGGGGTCATTGATGGGAAATTTGAAAGTGGGTATCTAGTTACTGTCACCATTGGTTCGGAGAAACTCAAAGGTGTACTTTATCAAGCTCCACAGAGCCCTGTATTGCCTGCATCCCATCATAGTGCCTCGGCTAATAACAACAATGCTTCTGCTTCATTGGGTGTCCATCGTCGGCGACGCAGGAAGAAGTCTGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGCGGCTACAATTTCTTCTTTGCTGAGCAGCATGCAAGACTCAAGCTACTTCACCATGGAAAGGACAGAGAGATTAGTAGGATGATTGGTGAACTCTGGAACAAGTTAAAAGAATCAGAAAAGACGGTAAGGATTTTGTTGTCTTTTATATAG 960 0.4313 MASTSCVGNSSLPMKDAASSYRPYPLPLAKYEEVMDNPQLFMFTLEKLHAAMGTKFMIPIVGGRELDLHRLFVEVTSRGGIAKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASLLCHYEQIYYFKAREWDPTAPEVLQNQSTLPVPPPKIQFPQPLSEIQPTVFHQSNVNAAKLPEAMATSSAGSPVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQSPVLPASHHSASANNNNASASLGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLHHGKDREISRMIGELWNKLKESEKTVRILLSFI 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00317 319 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Pumo3g00317 319 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 265 310 IPR009071 -
Pumo3g00317 319 Gene3D High mobility group box domain 248 313 IPR036910 -
Pumo3g00317 319 Gene3D - 28 138 IPR036431 GO:0003677
Pumo3g00317 319 SMART ARID_2 32 122 - -
Pumo3g00317 319 CDD HMG-box_AtHMGB9-like 265 312 - -
Pumo3g00317 319 MobiDBLite consensus disorder prediction 245 259 - -
Pumo3g00317 319 SUPERFAMILY ARID-like 33 133 IPR036431 GO:0003677
Pumo3g00317 319 SMART bright_3 36 127 IPR001606 GO:0003677
Pumo3g00317 319 FunFam High mobility group B protein 15 29 142 - -
Pumo3g00317 319 Pfam HMG (high mobility group) box 265 310 IPR009071 -
Pumo3g00317 319 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 312 - -
Pumo3g00317 319 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Pumo3g00317 319 MobiDBLite consensus disorder prediction 226 244 - -
Pumo3g00317 319 MobiDBLite consensus disorder prediction 226 271 - -
Pumo3g00317 319 SUPERFAMILY HMG-box 253 311 IPR036910 -
Pumo3g00317 319 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00317 Pumo-Chr3 4656397 4659984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00317 1 312 ARID Transcription Factor Family AT1G04880 59.568 3.26e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pumo3g00317 ARID 1.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00317 - - gmx:100783284 556.599