Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00278 ATGAAATTAAGTTGCAATGGTTGTCGCATACTTCGCAAAGGTTGCAGTGACAATTGCATCATCAGGCCTTGCCTCGAGTGGATTAACTCTCCTGAGTCCCAAGCCAACGCCACCCTTTTCCTTGCAAAATTCTATGGTCGTACTGGCCTGTTCAACCTCATCACTGCTGCTCCCCAACACCTTGGCCCAGTTGTGTTTAGGTCATTATTGTATGAGGCGTGTGGGAGATTAGTGAATCCCACGTATGGGTCACTAGGTTTATTTAGGACTGGGGAATGGGACCAATGTGAAGCTGCAGTTGACGCCGTGCTAACAGGGTCCAAAATCAATGGTGTGGCACCTTTTGATTGGCATACCTCAGGGACACTTGCTAATGATCATATTCTCTCAACATGTGATATACGCCATATGCCAAAGGGGACCAATGTGGATGGCATGAGAGGTAGAAATGAGTTCAAGAAAGTCGGGCAAGTTATCAAACCTAAACCACAACTGGGTCCCATGGACTTGACTGTGTTGTGGAAACCCAATTGGCAGAGTGGGAGCATGGAAGCTATGGAGGCTTCATTGGTAAGCCAAGATGAGTTGAACCGAGCCGGTGAAACCGAGTTGGACTTGGAACTCGCTCTTGGCTTTAGTTGCCAATCAACCTATGGCAAGAAAACACATTATTAA 675 0.4696 MKLSCNGCRILRKGCSDNCIIRPCLEWINSPESQANATLFLAKFYGRTGLFNLITAAPQHLGPVVFRSLLYEACGRLVNPTYGSLGLFRTGEWDQCEAAVDAVLTGSKINGVAPFDWHTSGTLANDHILSTCDIRHMPKGTNVDGMRGRNEFKKVGQVIKPKPQLGPMDLTVLWKPNWQSGSMEAMEASLVSQDELNRAGETELDLELALGFSCQSTYGKKTHY 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00278 224 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Pumo3g00278 224 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 190 - -
Pumo3g00278 224 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00278 Pumo-Chr3 3562253 3563138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00278 1 219 AS2 family AT3G02550 44.248 4.88e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo3g00278 LOB 8.7e-21 No_clan