Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00270 ATGAAGGTTTTTGTTAAGACTCTCAAGGGCACTCACTTCGAAATCGAAGTGAAGCCGCAAGACACGGTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTAATTCATCAAGGGAAAGTTCTCAAGGATGCTACTACCTTGGAGGAGAATAAAGTAGCTGAAAATAGTTTCATTGTAATTATGCTATCAAAGAGTAAGAGCACATCTGGTGAAGGATCTACTACTTCAACTGCACCATCAACCAAGGCTCCACAGACAAGTACAGCTCCTGCTTCAACCCCTCCAGTGTCAGTAGCGCCTCAAGCTCCTGCTTCAACCCCTCCAGTGTCGGTAGCGCCTCAAGCTCCTGCTTCAACCCCTCCAGTGTCGGTAGCGCCTCAAGCTCCTGCTACAACTGGGGCACTGCCTGCATCTGTTACTGCACCTGTATCTTCACCTTCTCCAGATCCAGCCACAGCTCCTGCTCTTGTATCTTCAGGAACTGCTGTGGAAGGGTCTGATATCTATGGGCAGGCTGCATCCAATCTGGTTGCTGGAAGCAACTTGGAGGGAACAATTCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGACAGGGATACTGTAGTCCGTGCTCTTCGAGCTGCCTACAACAACCCTGAGAGAGCGGTTGAATATTTGTATACAGGTATCCCCGAGCAAGCGGAAGCTCCACTTGTAGCCCAAGCGCCTGCAAGTGCTCAACCTGCAAATCCTGCTGCTGCTGCTCCACAAACAGCACAACCTGCTTCAGTTACCTCAACTGGACCTAACGCTAATCCTTTAGACCTTTTTCCCCAGGGTCTCCCCAATGTGGGTTCTGGTGCTGCTGGTGCTGGCTCATTAGATTTTCTACGCAACAGTCAACAATTCCAAGCCTTGCGAGCTATGGTACAGGCTAATCCACAAATATTGCAGCCTATGCTTCAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGACCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGTGGAAGGTGGCGAAGGGAACATATTGGGGCAGCTGGCTTCTGGCATGCCACAAGCAGTAACTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGTGTAAGTTTGACTTCTTGGCTATATAAAGCATTAAATGATAGATGTTTTCTTGCCGAAGCCTTTTTAGGACTATGA 1236 0.4822 MKVFVKTLKGTHFEIEVKPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDATTLEENKVAENSFIVIMLSKSKSTSGEGSTTSTAPSTKAPQTSTAPASTPPVSVAPQAPASTPPVSVAPQAPASTPPVSVAPQAPATTGALPASVTAPVSSPSPDPATAPALVSSGTAVEGSDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVAQAPASAQPANPAAAAPQTAQPASVTSTGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNILGQLASGMPQAVTVTPEERQAIERVSLTSWLYKALNDRCFLAEAFLGL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00270 411 Gene3D - 187 237 - -
Pumo3g00270 411 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 388 - -
Pumo3g00270 411 SMART ubq_7 1 75 IPR000626 GO:0005515
Pumo3g00270 411 SUPERFAMILY XPC-binding domain 297 362 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pumo3g00270 411 FunFam UV excision repair protein RAD23 1 80 - -
Pumo3g00270 411 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Pumo3g00270 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 192 235 IPR015940 -
Pumo3g00270 411 SMART CBM 298 341 IPR006636 -
Pumo3g00270 411 MobiDBLite consensus disorder prediction 108 135 - -
Pumo3g00270 411 MobiDBLite consensus disorder prediction 257 279 - -
Pumo3g00270 411 MobiDBLite consensus disorder prediction 77 107 - -
Pumo3g00270 411 MobiDBLite consensus disorder prediction 77 170 - -
Pumo3g00270 411 CDD Ubl_Rad23 1 74 - -
Pumo3g00270 411 SMART uba_6 194 234 IPR015940 -
Pumo3g00270 411 PRINTS DNA repair protein Rad23 signature 326 348 IPR004806 GO:0006289
Pumo3g00270 411 PRINTS DNA repair protein Rad23 signature 375 391 IPR004806 GO:0006289
Pumo3g00270 411 NCBIfam UV excision repair protein Rad23 1 388 IPR004806 GO:0006289
Pumo3g00270 411 CDD UBA1_Rad23_plant 188 237 - -
Pumo3g00270 411 SUPERFAMILY UBA-like 191 244 IPR009060 GO:0005515
Pumo3g00270 411 Pfam UBA/TS-N domain 197 232 IPR015940 -
Pumo3g00270 411 Pfam XPC-binding domain 300 355 IPR015360 GO:0003684|GO:0006289|GO:0043161
Pumo3g00270 411 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Pumo3g00270 411 MobiDBLite consensus disorder prediction 145 166 - -
Pumo3g00270 411 FunFam UV excision repair protein RAD23 B 291 356 - -
Pumo3g00270 411 FunFam UV excision repair protein RAD23 homolog 187 237 - -
Pumo3g00270 411 MobiDBLite consensus disorder prediction 248 279 - -
Pumo3g00270 411 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Pumo3g00270 411 Gene3D - 291 356 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pumo3g00270 411 Gene3D - 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00270 Pumo-Chr3 3413681 3418300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00270 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 1.27e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00270 K10839 - gmx:100814162 527.709