Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00248 ATGGGAAAGAAATCTTTGAAGCTGCCCTTTCTTTTCAAAACCAACAAAGAAGCACCAAGAAAGCATCATCATCATCATCATCATCCATGGCAATTCATGCCCTCTTGTGGCCACTCAAAGACCCTCTCTTTCCGAGGTGGAGATGATGACATGTTCAAGACAGTTAACTCCGTGTTCTTCGACCCTTCAGCTGAGAGCACCATTGAAACTACCAAGTCATGGTTCACAACCTCATCTGAATCTGCAAGCATCTCAACTGAGTCAGAAGACTACTACTGTTGTGATGGGGAGTCTTTGGAGATGTTGGTACGTGGTGTGAGGTCAGAGAGGCTTTTTTTCGAACCAGGTGACACAAGTTCCATCTTGGAAAAGGCCAAGGCTAGTGGATTTCCCTTCAAAGAAAGTGTGGTCCTGGCTATGGAGTCAGAGGACCCTTATGAGGACTTTAAGAGATCAATGGAGGAGATGGTTGAGTCTCATGGAGTTAGAGATTGGGAAGGCTTGGAGGAGCTTTTAACTTGGTATTTAAGGGTCAATGGTAGAAATAATCATGGGTTTATAGTGGGTGCTTTTGTTGATTTACTCTTTAGTTTAGCAGCTTCTAATAGTTCTAACTCTTGTTCTGATTCAACTGCATATTCTTCTGCGGTTTCTTCTTTTGCTTCTTCCCCCTTGAGTGGCCAGAATGAGATTGTTGAGCATGGGATTGGGAATGATGATGCTGTAACATCTTAG 735 0.434 MGKKSLKLPFLFKTNKEAPRKHHHHHHHPWQFMPSCGHSKTLSFRGGDDDMFKTVNSVFFDPSAESTIETTKSWFTTSSESASISTESEDYYCCDGESLEMLVRGVRSERLFFEPGDTSSILEKAKASGFPFKESVVLAMESEDPYEDFKRSMEEMVESHGVRDWEGLEELLTWYLRVNGRNNHGFIVGAFVDLLFSLAASNSSNSCSDSTAYSSAVSSFASSPLSGQNEIVEHGIGNDDAVTS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00248 244 NCBIfam uncharacterized plant-specific domain TIGR01568 136 199 IPR006458 -
Pumo3g00248 244 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 29 200 IPR038933 GO:0045892
Pumo3g00248 244 ProSiteProfiles OVATE domain profile. 138 197 IPR006458 -
Pumo3g00248 244 Pfam Transcriptional repressor, ovate 142 198 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00248 Pumo-Chr3 3159800 3160801 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Pumo3g00248 Ovate 4.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00248 - - gmx:100527123 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03243 5 81446623 81447348 Pumo3g00248 3 3159800 3160801 ECH
Pumo3g00248 3 3159800 3160801 Pumo3g00248 3 3159800 3160801 ECH