Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00237 ATGGGATCCAAAATTCTTCCGAAATGGGCATCGAAGCCCTGCGTAATGGGAATCGACGAAGCTGGAAGAGGCCCCGTTTTAGGGCCTATGGTCTACGGTTGCTTGTACTGTGCTCAGTCCTATCTCAACACCATAGCCACATTGAGTTTTGCAGATTCTAAGACACTAAAGGAAGAGAAGAGGGAGGAATTGTTTGAAACTTTAAAAGCCAACGATTCTATTGGATGGGATGTTGATGTCATTGACCCACGGGAACTCTCTGCTAAAATGCTTAAGAAGAATAAGATTAACTTGAATGAGATTTCACATAGCTCTGCCATGGGCCTCATTGATAGGGTACTCAAAATGGGAGTGCTTCTAACTGAGGTTTATATAGATACAGTTGGAGATGCAGGGAAATATGAAATGAAGCTGTCTAATAGTTTTCCATCTATCAAATTCGTGGTTGCAAAGAAGGCTGATAGCCTTTACCCCGTTGTCAGTGGTGCAAGCATAGTTGCAAAGGTCACAAGGGACCGTGCTTTAAGAGACTGGGTGCTTGATGAGACCGCTGAAAACATGCAGAGGAATTTTGGATCTGGATATCCTGGAGATCCCCAAACCAAGTCTTGGCTAGAGAATCACAAACATCATATATTTGGATTTCCAACATTGGTCCGATTTAGTTGGGGAACCTGCAACACTTATTTTAAAGATATTGCAGAAGTTTTATGGGAGTCTGACAATTTGGATGAAGATGGTGGTGGTAGCAATAATAAGAATGGCAAGCGACAATTGAAATTAAGCAATGTGGGTTTCACCACATCCAAGAGAAGTGAAGAAATAGAATCAAGTGGTAAAGGACGCTGTAGGTTTTTTCAGGCTCGGAAACTTGAGCACCTCACTAATTTCTAA 894 0.4206 MGSKILPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCAQSYLNTIATLSFADSKTLKEEKREELFETLKANDSIGWDVDVIDPRELSAKMLKKNKINLNEISHSSAMGLIDRVLKMGVLLTEVYIDTVGDAGKYEMKLSNSFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWVLDETAENMQRNFGSGYPGDPQTKSWLENHKHHIFGFPTLVRFSWGTCNTYFKDIAEVLWESDNLDEDGGGSNNKNGKRQLKLSNVGFTTSKRSEEIESSGKGRCRFFQARKLEHLTNF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00237 297 FunFam Ribonuclease 1 185 - -
Pumo3g00237 297 Gene3D - 1 185 IPR036397 GO:0003676
Pumo3g00237 297 Pfam Ribonuclease HII 16 226 IPR024567 GO:0004523
Pumo3g00237 297 Gene3D Ribonuclease hii. Domain 2 186 235 IPR023160 GO:0004523
Pumo3g00237 297 PANTHER RIBONUCLEASE H2 SUBUNIT A 4 284 IPR001352 GO:0003723|GO:0004523
Pumo3g00237 297 NCBIfam ribonuclease HII 15 228 IPR004649 GO:0004523|GO:0016070
Pumo3g00237 297 CDD RNase_HII_eukaryota_like 16 232 - -
Pumo3g00237 297 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 13 235 IPR024567 GO:0004523
Pumo3g00237 297 FunFam Ribonuclease 187 234 - -
Pumo3g00237 297 SUPERFAMILY Ribonuclease H-like 14 231 IPR012337 -
Pumo3g00237 297 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00237 Pumo-Chr3 3024294 3027750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00237 5 297 Core DNA Replication Machinery Family AT2G25100 66.327 1.03e-144 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00237 K10743 - gmx:100779875 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00237 3 3024294 3027750 Pumo3g00237 3 3024294 3027750 ECH