Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00222 ATGGCGGCATCGTCTTCCTCAGCATCGCTCTTTGGATTTAGAGAAGAGGATCAGAACCAGATGAAGCAACAGCATTCCTTGACACCATCTTCATCAACAACTCCAGCTGCACCACCATCCCAGAAGAAAAAGAGAAACCAACCTGGAACACCATATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTTAAGCAAAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACAGGGATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGATTGGAAAGCCCATTCTAAGACTTGTGGCACCAGAGAATATAGATGTGACTGTGGCACCCTCTTCTCAAGGCGAGACAGTTTCATCACTCACAGGGCCTTCTGCGATGCACTGGCTCAAGAGAGTGCAAGACAGCCACCGAGCCTTAGTGGCGGGGGCGGCGGCATTGGCAGCCACCTATACGGAGGCGCCACCAACATGGCCTTAAACCTATCTCAGGTCGGTTCTCAGATCTCAACCATGCAAGACCCCAACGCCCAACCAACCGAACTCCTCCGCCTCGGCGCCACCGCCGGTCGAACCGGCCAGTTCGAGCACATCCTCGGTTCACCCTTCCGACCCTCAAACCAACAACCTTTCTTCATCTCCGAACCTAACCAAACCTACCACCCCGACCAGCTCCAAAACAAACCCTTCCAACAAGGATTGATGCAATTGTCTGATCACCTTAACAACAACCACCACAACAATTCACCCTACAACCTTCCCTTTCTCTCCAACAACACCACCAACACAAGCAACGCTGCTTCGTTCTCTGAACACTTCAACAATGCCAATGGAGGAGGCAACAACAACGAGGGCACTAACTTCTTCACAACTTCAAGTGCACCTTCTCTCTTCAGCAACAACAATGCCAATGCGAATGCCAATGTCAATGCGTTATCTCACATGTCCGCAACTGCGCTGCTTCAGAAAGCTGCACAAATGGGTGCAACTTCGAGCAACAGCACCGCTTCGCTCTTGAAAAGCTTCGGAAGCGCGTCCTCCAGCAGCGGCTCTAAATCTGATCAACAGCACAGGCCACTGGTCAACGCTGCAAACTACGTCTTCGGAGGGAATCACGTTAACGAACAGAGTAACAGTAACCTCCAAGACCTCATGAACTCCTTCGCTGTTAGTGGAAACTCTTCCATTTTCGAAGGAGGGTTTGAAGCATATGATCATAATAATAATAATAATAATAATAGGGACCCAAAAGTGCACGCAATGAGTGGAAGTAGCAGCATTGGAGGGTCTGATAGGCTCACCCGCGATTTTCTGGGAGTTGGTCAAATAGTGAGAGGCATGAGTGGGAGTGGAGGGGTTGCGCAGAGAGAACAGCAACATGGCTTCAACTTGAGTTCTTTGGAGGCAGAAAGAAGTAATAATAATAATAATATTAATAGTAATAATGCTGCGCCGTCAGGGCAAGCTTTTGGAGGTGGTGGAGGAAATTTTCAGTGA 1704 0.4888 MAASSSSASLFGFREEDQNQMKQQHSLTPSSSTTPAAPPSQKKKRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPSLSGGGGGIGSHLYGGATNMALNLSQVGSQISTMQDPNAQPTELLRLGATAGRTGQFEHILGSPFRPSNQQPFFISEPNQTYHPDQLQNKPFQQGLMQLSDHLNNNHHNNSPYNLPFLSNNTTNTSNAASFSEHFNNANGGGNNNEGTNFFTTSSAPSLFSNNNANANANVNALSHMSATALLQKAAQMGATSSNSTASLLKSFGSASSSSGSKSDQQHRPLVNAANYVFGGNHVNEQSNSNLQDLMNSFAVSGNSSIFEGGFEAYDHNNNNNNNRDPKVHAMSGSSSIGGSDRLTRDFLGVGQIVRGMSGSGGVAQREQQHGFNLSSLEAERSNNNNNINSNNAAPSGQAFGGGGGNFQ 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00222 567 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Pumo3g00222 567 SMART c2h2final6 112 142 IPR013087 -
Pumo3g00222 567 SMART c2h2final6 71 93 IPR013087 -
Pumo3g00222 567 SMART c2h2final6 147 167 IPR013087 -
Pumo3g00222 567 MobiDBLite consensus disorder prediction 1 47 - -
Pumo3g00222 567 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Pumo3g00222 567 MobiDBLite consensus disorder prediction 540 556 - -
Pumo3g00222 567 FunFam protein indeterminate-domain 12-like 50 118 - -
Pumo3g00222 567 MobiDBLite consensus disorder prediction 540 567 - -
Pumo3g00222 567 Gene3D Classic Zinc Finger 125 204 - -
Pumo3g00222 567 Gene3D Classic Zinc Finger 54 119 - -
Pumo3g00222 567 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 532 IPR031140 -
Pumo3g00222 567 MobiDBLite consensus disorder prediction 1 55 - -
Pumo3g00222 567 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Pumo3g00222 567 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Pumo3g00222 567 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00222 Pumo-Chr3 2870833 2877915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00222 41 521 IDZ Gene Family AT2G02070 49.180 2.04e-136 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g00222 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00222 K25870 - gmx:100799389 845.499