Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00209 ATGACAGTGACACCATCTCCACTTCAAACTGCATGCATGGCTGCTACCCTGCCAATCCTTTTCTTCAAGATTATTCTTAAAACTAATCTTGAAAGCCTTAAAATACCCAACAAGTTTACAAGCAAATATGGAGGTGGCTTGCCAAATCCAGTGTTTATCAAGCCTTTGGACGGCACTGAATGGAAAGTGAATTGGACAAAACAGAACGGTGAGGTTTGGTTCCAAAAAGGTTGGAAAGAATTTGTTCAACATTACTCCCTAGATGAAGGACATTTGATTTTCTTTAAATACCAAGGAACTTCCCAGATTGATGTTCTCATACTTGACCAAACTGCACTAGAAATAGACTATCCTTCTGATGAAAATGACAACCTTGATGAGAAACCCAATATAATTTTCGGTCAATTGCCAGACCAGAAGGCCGAACAAATGAGAGGTGAAAAGCCTATTCAAAGAGCTTCATCGTTGAATTGGCCAATGCAAACTAGAGCACGGGAAGTAGCAAGCAATTTCATCTCATACAATCCTTTCTTCACGGTTTTCATAAAGCCTGTTCATGTAGCAGATGGCCGGCTGCCTTTACCAGATTTGAAAGGCATTATTGAGAACAAGGAGAAGTATGTGATGCTGCAGCTTGGGGAAAGATCATGGAATGTAAAGTTGCTCCCTAGTCACAGCTCTACACTTCCCAGGCTCTCTGCTGGTTGGTCCTCGTTTGCAAGTGAAAGTGAATTGCAACCTGGAGACGTTTGTGTATTTGAACTGATTAGCAGGGAGGATTCAGTTTTTAGAGTTCATGTTTTCAAAAGGCACAGTTAA 819 0.4103 MTVTPSPLQTACMAATLPILFFKIILKTNLESLKIPNKFTSKYGGGLPNPVFIKPLDGTEWKVNWTKQNGEVWFQKGWKEFVQHYSLDEGHLIFFKYQGTSQIDVLILDQTALEIDYPSDENDNLDEKPNIIFGQLPDQKAEQMRGEKPIQRASSLNWPMQTRAREVASNFISYNPFFTVFIKPVHVADGRLPLPDLKGIIENKEKYVMLQLGERSWNVKLLPSHSSTLPRLSAGWSSFASESELQPGDVCVFELISREDSVFRVHVFKRHS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00209 272 PANTHER B3 DOMAIN-CONTAINING 21 266 - -
Pumo3g00209 272 SMART B3_2 177 271 IPR003340 GO:0003677
Pumo3g00209 272 SMART B3_2 21 111 IPR003340 GO:0003677
Pumo3g00209 272 SUPERFAMILY DNA-binding pseudobarrel domain 20 118 IPR015300 -
Pumo3g00209 272 SUPERFAMILY DNA-binding pseudobarrel domain 175 270 IPR015300 -
Pumo3g00209 272 Gene3D - 17 112 IPR015300 -
Pumo3g00209 272 CDD B3_DNA 176 269 IPR003340 GO:0003677
Pumo3g00209 272 Gene3D - 159 271 IPR015300 -
Pumo3g00209 272 Pfam B3 DNA binding domain 29 102 IPR003340 GO:0003677
Pumo3g00209 272 Pfam B3 DNA binding domain 177 270 IPR003340 GO:0003677
Pumo3g00209 272 CDD B3_DNA 20 109 IPR003340 GO:0003677
Pumo3g00209 272 ProSiteProfiles B3 DNA-binding domain profile. 177 271 IPR003340 GO:0003677
Pumo3g00209 272 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00209 Pumo-Chr3 2715736 2717686 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00209 4 124 B3 DNA Binding Superfamily AT1G49475 34.615 2.62e-19 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo3g00209 B3 2.4e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00209 - - gmx:102661781 444.121