Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00208 ATGGCTGCTCATGTTCAAGGAGGGAATGCTATCCTTCCTATCCGTTTCTGCAAGGCTATTCTTAAAACTAATCTTCAAAGGCTTAAAATACCCAACAAGTTTGCAATTAGATATGGAGATGGGTTGCCAAATCCAGTGTTTGTGAAGCCTCCGGATGGCACTCGATGGGAAGTGCATTGGGCGAAACATAGTGGTGAGATTTGGTTTGAAAAAGGTTGGAAAGAATTTGTTGAGTATTATTCCCTAGATCAAGGGCATTTTATTTTCTTTGAATACGAAGGAACTTCCCATATTGTCGTTCTCATACTTGACCACGAAAGTGCTATGGAAATAGACTATCCTTCTTGTGTCAATTGTGATGGAAATGACAACCTTGACAATAGAGATGAATGGCCAGACCAGAAGCCTAGAAAAATGAGAGGTGAAAAGCCTACTCAAAGAACTAAATCGTTGAATTGGCCTATGCAACGTAGAGCACAGGAAGTAGCAAGCAATTTCATCTCAAACAATCCTTTTTTCACAGTTTTCATAAAGGCTGTTCATGTGGCAGGAGGCCGGCTGCCTATACCAGATTTGAAAGGCATTATTGAGAGCAAGGGGAAGTATGTGAAGCTGCAACTTGGGGAAAGATCATGGAATGTAATGTTGCCCGCTATTTACAACGTTGGCTCTTTTTCATATCGCATGTTGTCTTCTGGGTGGACCTTGTTTGCACGTGAAATTGAATTGCAACCAGGAGACGTTTGTGTATTTGAACTGATCAACAGGGAGGATCCAGTTTTTAAAGTTCATGTTTTCAAAAGTCACGGTTAA 813 0.4096 MAAHVQGGNAILPIRFCKAILKTNLQRLKIPNKFAIRYGDGLPNPVFVKPPDGTRWEVHWAKHSGEIWFEKGWKEFVEYYSLDQGHFIFFEYEGTSHIVVLILDHESAMEIDYPSCVNCDGNDNLDNRDEWPDQKPRKMRGEKPTQRTKSLNWPMQRRAQEVASNFISNNPFFTVFIKAVHVAGGRLPIPDLKGIIESKGKYVKLQLGERSWNVMLPAIYNVGSFSYRMLSSGWTLFAREIELQPGDVCVFELINREDPVFKVHVFKSHG 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00208 270 CDD B3_DNA 172 267 IPR003340 GO:0003677
Pumo3g00208 270 SMART B3_2 16 106 IPR003340 GO:0003677
Pumo3g00208 270 SMART B3_2 172 269 IPR003340 GO:0003677
Pumo3g00208 270 Pfam B3 DNA binding domain 23 104 IPR003340 GO:0003677
Pumo3g00208 270 Pfam B3 DNA binding domain 172 267 IPR003340 GO:0003677
Pumo3g00208 270 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Pumo3g00208 270 PANTHER B3 DOMAIN-CONTAINING 15 264 - -
Pumo3g00208 270 ProSiteProfiles B3 DNA-binding domain profile. 172 269 IPR003340 GO:0003677
Pumo3g00208 270 SUPERFAMILY DNA-binding pseudobarrel domain 15 105 IPR015300 -
Pumo3g00208 270 CDD B3_DNA 15 104 IPR003340 GO:0003677
Pumo3g00208 270 MobiDBLite consensus disorder prediction 127 145 - -
Pumo3g00208 270 Gene3D - 13 107 IPR015300 -
Pumo3g00208 270 SUPERFAMILY DNA-binding pseudobarrel domain 168 269 IPR015300 -
Pumo3g00208 270 MobiDBLite consensus disorder prediction 127 148 - -
Pumo3g00208 270 Gene3D - 154 269 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00208 Pumo-Chr3 2707471 2713943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00208 15 141 B3 DNA Binding Superfamily AT1G49475 38.760 1.39e-20 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo3g00208 B3 4.8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00208 - - gmx:102661781 357.836