Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00203 ATGGATATCAGTTTTGTTTCTTCTGCTTCTGGTGACATGAACATGATCATGCAAAACTTAGTAGAGAGACTAAGACCCCTCGTGGGTTTGAACGGATGGGACTATTGTATCTACTGGAAATTGAGTGAAGACCAAAGGTTTCTTGAGTGGTTGGGATGCTGTTGTGCTGGCACTGAAAGCAATCAAAATGCTGGGGAAGAACATCTTTTCTCTGTCTCTTCTGTGGCTTCATGCAGGGATACCACTTATCCACACTCCAGAACAAAGCCCTGTGATCTTCTTTCCCAACTTTCCACTTCCATATCCATAGATAATTCTGGGATTCATGCACAGACCCTATTAACAAACCAACCCAACTGGGTGAACTATTCCAATAGCATGGATCCTAACATTTTGGAAGAAACAATTGGGACCCAGGTTTTGATTTCAGTGCCAGGTGGACTAGTTGAGCTGTTTGTAACTAAACAAGTGCCTGAAGATCATCAAGTAATAGATTTTGTCACAACCCAGTGCATTGAAGCGGTGAACCAGTCAATGAGCTTCAACATTGACGTGAATTCAATGAGCAACATGCAATCAAACCCACTTCTAGGCGACGAAAACGAAGGCAACAACGACAGGAACAATCACTTCCACCCTTCAGAACACGTCATCACTATGGACCACCGCATTGGTCTGTGCAATTCTCCACCGCTGAACTTCATGCAGCAGTTCAACTACAACCAGCAGCAGCACAACAGAATGAAGAGCGATGCCTTCTCTGAAGAATACCAAGGCAATTCCTTCCTTCATGACAAGCAAACCAACCCAGAAGAGGAGCATGACACGTATCAGAAAAGCCTCATGACAACAGATTCACAATTCGTGGAGCCTTTGGAGGCAAAAGAGAAGCAAGAGGCCGAGGACAAGGACTTGCTGAAACACGTTGTTGGTAGATCAGATTCAATGTCAGATTGCAGTGACCAGAACGAAGAAGAGGAAGATGGAAAGTATAGGAGGAGGAATGGGAAGGGGAACCAGTCCAAGAACCTTGTGGCTGAGAGGAAGAGAAGGAAGAAGCTCAATGATAGGTTATATAACCTTCGTTCTTTGGTTCCGAGGATCTCTAAGCTGGATAGGGCGTCCATTCTTGGAGATGCCATTGAGTATGTTAAGGATTTGCAGAAGCAAGTGAAGGAGCTCCAAGATGAGCTTGAGGAGAATGCAGACACTGAAAGCAACTGCATGAATGGGAATAATAATAATCAATATGTGGGTGTAGGTGAACTTGCTGGGCCAAACACTGAACATGGTAAGGCCCAAACCGGGTTGCATGTGGGAACATCAGGGAATGGCTATGTCTCCAAACAAAAGCAGGAAGATGCTACTGTCATTGACAAGCAGACCCAGCAGATGGAGCCACAAGTGGAAGTGGCTCTCATAGATGGGAATGAGTATTTTGTGAAGGTGTTCTGTGAGCACAGACCTGGTGGGTTTGTGAAACTGATGGAGGCGTTGAACACTATTGGCATGGATGTAGTGCATGCCACGGTAACCAGCCACAAGGGCCTCGTGTCAAATGTTTTTAAAGTGGAAAAAAAGGACAGTGAAACGGTTGAGGCTGAAGATGTAAGAGACTCACTGCTAGAGCTTACGCGGAACCGTTATAGAGGGTGGACTCATGAGATGACAGCAACGTCGGAAAATGGTGTGGCCAGGGATCAACATCAACTCCACAACCACCAGATAGGTGTCTACCCGCACCAGTTTCATACTTAA 1758 0.4556 MDISFVSSASGDMNMIMQNLVERLRPLVGLNGWDYCIYWKLSEDQRFLEWLGCCCAGTESNQNAGEEHLFSVSSVASCRDTTYPHSRTKPCDLLSQLSTSISIDNSGIHAQTLLTNQPNWVNYSNSMDPNILEETIGTQVLISVPGGLVELFVTKQVPEDHQVIDFVTTQCIEAVNQSMSFNIDVNSMSNMQSNPLLGDENEGNNDRNNHFHPSEHVITMDHRIGLCNSPPLNFMQQFNYNQQQHNRMKSDAFSEEYQGNSFLHDKQTNPEEEHDTYQKSLMTTDSQFVEPLEAKEKQEAEDKDLLKHVVGRSDSMSDCSDQNEEEEDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENADTESNCMNGNNNNQYVGVGELAGPNTEHGKAQTGLHVGTSGNGYVSKQKQEDATVIDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFVKLMEALNTIGMDVVHATVTSHKGLVSNVFKVEKKDSETVEAEDVRDSLLELTRNRYRGWTHEMTATSENGVARDQHQLHNHQIGVYPHQFHT 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00203 585 MobiDBLite consensus disorder prediction 404 421 - -
Pumo3g00203 585 SMART finulus 344 393 IPR011598 GO:0046983
Pumo3g00203 585 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
Pumo3g00203 585 MobiDBLite consensus disorder prediction 308 349 - -
Pumo3g00203 585 CDD ACT_UUR-ACR-like 481 544 - -
Pumo3g00203 585 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 236 546 - -
Pumo3g00203 585 ProSiteProfiles ACT domain profile. 480 552 IPR002912 -
Pumo3g00203 585 Gene3D - 326 403 IPR036638 GO:0046983
Pumo3g00203 585 Coils Coil 377 407 - -
Pumo3g00203 585 MobiDBLite consensus disorder prediction 399 434 - -
Pumo3g00203 585 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 400 IPR036638 GO:0046983
Pumo3g00203 585 CDD bHLH_AtAMS_like 341 406 - -
Pumo3g00203 585 Pfam Helix-loop-helix DNA-binding domain 345 388 IPR011598 GO:0046983
Pumo3g00203 585 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 21 168 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00203 Pumo-Chr3 2603799 2606941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00203 17 559 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 47.905 6.59e-152 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g00203 bHLH-MYC_N 5.9e-20 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00203 - - gmx:100798282 959.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00203 3 2603799 2606941 Pumo3g00203 3 2603799 2606941 ECH