Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo3g00200 | ATGGATTTTGACGAGTATGAGTATTTAGAGAAAACAGTTGAAAATCCTGAAATTAAGAAGGAGAAGCAAAGGGCTAATGGTGGGGATAAAAGTGTGAAATCCGAAGAGAGAGGGCATAATGGGAGTTCAAAGCATAAGGATGATGGTGATATTGATCTCCATTCCAAGCATTCAAAATCTGGAGACGATTCTCGTGATCGCGAGAGGCAGAGAGAAAGAGGCTCATCTCGTCATGGTACAAAGTCCAGGGACGGAGACAAGGAGAAGGATCAGCACAGAAGCTCTGGGGGCAGTAGGGATAGGAAGAGGGATAGGGACAGAGACCATGAGGACAAGGATAGGAAGAGAGACAAGGACAGAGACCACGAGGACAAGGATAGAAAGAGAGATAGGGAGAGAGACAGAGATCGCGATCGTGACCAAGAAAGGGACAGAAGGGACCGTGGGACTGAGGGTGAGCGGGAAAGGCGAAGCAGAAGTAGATCTGATAGGCATCGAACTGATCTCGATGACAAAGACAGAGAGACAAGTCGTGACAGGGGCTATAGAGATAGAGAAAGAAGCCGGGATAAGGATTACAGAGACAGAGAAAGGGTGAGGGAATCAAGGGAACAGGATAGAGAAAACAGACGGCATAAAGAGAAAAAGGAAGAAGCAACAGAACCTGAGGCTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTATATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAGGGTGTTGGGTATATTGAGTTTTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCAGGCCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCTTCGGAAGCGGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTAATGGACTCACTGGACTTGTAGGCCCTTATTCTGGGGGAGCAAGAAAGCTGTATGTTGGCAATCTGCATATCAGTATTACTGAAGCTGATATTCGTGGGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAACTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGGCTTGAGGATGCAAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATCGGTGGTAGGACAATCAAGGTATCGGCTGTTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGAAGGAGGTGGCTTGTCCCTGAATGCATGTTCTCGAGCATTACTCATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGCATGGTTGGTTCCCTCGGTAATTCTGTTGTCAACAACACAGGTCTTAATCTACCAGCAACAGGAAACATACCTGCAGCTGCGTCTGTGGGTTCTTCCCTTTCTTCTGTTCCTGCAGTAGCTGGATTGGCAGGTGGAGGTCTCCAAATTCCCACGGCAACAATTCCTTCTATTGATACAATCGGTGTTCCAAGTGAATGCTTAATGTTAAAGAATATGTTTGATCCCAAAGATGAGACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGGACATTAAAACACATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTACTTACGATTTGAAGATACCCAATCTGCAATAAGTGCACAGCAGGCCTTGCACGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTTCCCCAATCATATGAGGAAAAATTCCCAGAAAGCAGATAA | 1848 | 0.4497 | MDFDEYEYLEKTVENPEIKKEKQRANGGDKSVKSEERGHNGSSKHKDDGDIDLHSKHSKSGDDSRDRERQRERGSSRHGTKSRDGDKEKDQHRSSGGSRDRKRDRDRDHEDKDRKRDKDRDHEDKDRKRDRERDRDRDRDQERDRRDRGTEGERERRSRSRSDRHRTDLDDKDRETSRDRGYRDRERSRDKDYRDRERVRESREQDRENRRHKEKKEEATEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVANGLTGLVGPYSGGARKLYVGNLHISITEADIRGVFEAFGQVELVQLPLDETGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEVGGNTGDFDDDEGGGLSLNACSRALLMQKLDRSGTASSMVGSLGNSVVNNTGLNLPATGNIPAAASVGSSLSSVPAVAGLAGGGLQIPTATIPSIDTIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECSKFGTLKHIYVDKKSAGFVYLRFEDTQSAISAQQALHGRWFAGKMITASFMVPQSYEEKFPESR | 615 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo3g00200 | 615 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 231 | 308 | IPR000504 | GO:0003723 | |
| Pumo3g00200 | 615 | CDD | RRM3_RBM39_like | 520 | 602 | - | - | |
| Pumo3g00200 | 615 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 521 | 604 | IPR000504 | GO:0003723 | |
| Pumo3g00200 | 615 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 241 | 300 | IPR000504 | GO:0003723 | |
| Pumo3g00200 | 615 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 337 | 406 | IPR000504 | GO:0003723 | |
| Pumo3g00200 | 615 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 545 | 597 | IPR000504 | GO:0003723 | |
| Pumo3g00200 | 615 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 335 | 412 | IPR000504 | GO:0003723 | |
| Pumo3g00200 | 615 | FunFam | Splicing factor CC1-like | 164 | 316 | - | - | |
| Pumo3g00200 | 615 | SUPERFAMILY | RNA-binding domain, RBD | 335 | 607 | IPR035979 | GO:0003676 | |
| Pumo3g00200 | 615 | FunFam | CC1-like, splicing factor | 330 | 438 | - | - | |
| Pumo3g00200 | 615 | Gene3D | - | 330 | 436 | IPR012677 | - | |
| Pumo3g00200 | 615 | FunFam | Splicing factor, CC1-like protein | 516 | 615 | - | - | |
| Pumo3g00200 | 615 | CDD | RRM1_RBM39_like | 232 | 304 | - | - | |
| Pumo3g00200 | 615 | Gene3D | - | 516 | 615 | IPR012677 | - | |
| Pumo3g00200 | 615 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 614 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
| Pumo3g00200 | 615 | MobiDBLite | consensus disorder prediction | 1 | 230 | - | - | |
| Pumo3g00200 | 615 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 426 | 539 | IPR029123 | - | |
| Pumo3g00200 | 615 | SUPERFAMILY | RNA-binding domain, RBD | 224 | 323 | IPR035979 | GO:0003676 | |
| Pumo3g00200 | 615 | Gene3D | - | 162 | 316 | IPR012677 | - | |
| Pumo3g00200 | 615 | SMART | rrm1_1 | 232 | 304 | IPR000504 | GO:0003723 | |
| Pumo3g00200 | 615 | SMART | rrm1_1 | 522 | 600 | IPR000504 | GO:0003723 | |
| Pumo3g00200 | 615 | SMART | rrm1_1 | 336 | 408 | IPR000504 | GO:0003723 | |
| Pumo3g00200 | 615 | NCBIfam | splicing factor, CC1-like family | 111 | 612 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo3g00200 | Pumo-Chr3 | 2536583 | 2550455 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo3g00200 | 232 | 398 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 28.402 | 6.03e-13 | 69.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo3g00200 | K13091 | - | gmx:100795336 | 859.366 |