Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00194 ATGGGTGTGGCAGAGCAGATTCCCGATATGGAGGAGGGTACCTTGGAGATTGGAATGGAATACAGAACTGTATCTGGAGTTGCTGGACCATTGGTCATTCTTGACAAAGTTAAGGGACCCAAATTTCAAGAGATTGTTAATATTCGTTTAGGAGATGGAACTACTCGGCGTGGACAAGTTCTAGAGGTTGATGGTGAAAAGGCTGTTGTTCAGGTATTTGAAGGTACATCTGGGATCGACAATAAATTTACAACTGTGCAATTTACTGGAGAGGTGTTAAAAACTCCTGTCTCACTGGACATGCTTGGACGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGGAAGTTCCATCAATCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGACAGGAATATCCACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCTTTATTCTCAGCAGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGTCGTCAGGCTGGCTTAGTAAAGCGACTAGAGAAAACTGATAATCTTCTTGAGGGTGGTGGAGAAGAGGACAATTTTGCTATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCACAGTTTTTCAAACGTGACTTTGAGGAGAATGGATCAATGGAGAGAGTGACTCTTTTCCTTAATTTGGCTAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCACGTTCTTGTGATACTCACAGACATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTGCCGGGAAGACGTGGTTATCCTGGATATATGTATACAGATCTTGCAACAATTTATGAACGTGCTGGAAGAATTGAGGGGCGTAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCCAATGATGATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAGCAGATATACCCACCAATCAACGTCCTCCCATCACTATCTCGGTTGATGAAGAGTGCTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGCTCTATGCAAATTATGCTATCGGAAAGGATGTCCAGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTACCCAGGGAGCTTATGACACCCGCAATATATTCCAGTCACTAGATCTTGCATGGACTTTACTCCGGATTTTCCCCCGTGAACTTCTTCATCGTATACCAGCCAAGACTCTTGACCAGTTTTACAGCCGAGATGCTGGAGTCATTGATGATACTTCTCTGGCTGGCTGGCTATTTGGAATGATCCTCGTGGTCAGCTTTATTCCCTGCTTTTGGCTGGCTCAATGA 1554 0.4324 MGVAEQIPDMEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEGGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLEKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDAGVIDDTSLAGWLFGMILVVSFIPCFWLAQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00194 517 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Pumo3g00194 517 PIRSF V-ATPsynth_beta/V-ATPase_B 11 493 IPR022879 -
Pumo3g00194 517 CDD ATP-synt_V_A-type_beta_C 389 483 - -
Pumo3g00194 517 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034|GO:1902600
Pumo3g00194 517 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 7 487 IPR022879 -
Pumo3g00194 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 385 IPR027417 -
Pumo3g00194 517 Gene3D - 29 490 - -
Pumo3g00194 517 CDD V_A-ATPase_B 92 387 - -
Pumo3g00194 517 ProSitePatterns ATP synthase alpha and beta subunits signature. 370 379 IPR020003 GO:0005524
Pumo3g00194 517 Hamap V-type ATP synthase beta chain [atpB]. 18 488 IPR022879 -
Pumo3g00194 517 FunFam V-type proton ATPase subunit B, brain 29 490 - -
Pumo3g00194 517 NCBIfam V-type ATPase subunit B 20 488 IPR005723 GO:0033180|GO:0046961|GO:1902600
Pumo3g00194 517 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 379 IPR000194 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00194 Pumo-Chr3 2446473 2453318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00194 9 488 Primary Pumps ATPases(2) AT1G20260 96.875 0.0 951
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00194 3 2446473 2453318 Pumo3g00194 3 2446473 2453318 ECH