Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00179 ATGGAAAGGAAGTCCTTCAAATCTTATGGTTCCTACAACAAACATTCTAAAAGGTTTTCCGGCGCCGGAAACACCGATTCCGACCACGAGCAGCTCCCCATTCTCTTCGACCAAGAAACCCACCTCCACAACGCCATGTCCGCCGGTGACTACGTCGTCAAGATCAGCGACGACGGCCGCGACGCCCCCCAGGGCAGCAAGTTTTGGCGCGAGTCCAGCTACGATTTCTGGAACGGCGACGGCTCCACCACCACCGCCGCCGGAGGCAGCGACGAGAGCTTCGATTTCCGCCACTCGGAGGACCCGCCCTCGCAGCTGATCGGACGCTTCCTCCACAAGCAGCGGGCCTCCGGCGAGATGCAGCTCGACATGGATTTGGAAATGGAGGAGCTCCAGCGCGACGCCGACGACGGAAAGTTGACGCCGGTCGAGGAATCTCCGGTGACGCACCGCGTCTCGAGAGAGCTCAAGGTCTCGTTCGACGAACCCGCTTCCAATGTAAACCTTCTCCACGAAGCGCAAAACGACGCCGTCAGAAGAAGGCACAGCAAGGACTCGCCGTCGTTGTCGGAGTTCCAACGCCCTCCGCAACCGCCGCAATACGACCGTCGCCGGTCTTCCTCACAGTCGCCAGCCGGCGACGGCGAGGTTCTCCGGTGCACCTCGAACGCTTCCTTCGAGAGAAACCTTTCCATGCAGAGAAAATCGGCGTTGTTGAAGGCGAAAACGAGGTCTAGGTTAATGGACCCGCCAGAAGAACCAGACAGAAAATCGGGTCGGGTTTTAAAATCGGGCCAACTCCTATCCGGATTTTTGGGGAGGAGGAACGATGATGAGGAAGACGATCCGTTTTTGGAAGAGGATCTTCCTGATGAGTTTAAGGAGACTCATTTCAGCTTGTGGACTCTTCTTGAGTGGTTGAGTTTGATTTTGATCATTGGCTTGTTAGTAACCACCCTCTGTGTTCCCATTCTGAGAGACAAGGATCTGTGGCAGCTTAGGTTGTGGAAATGGGAGGTTATGGTTTTGGTTTTGATCTGTGGCAGGTTGGTGTCTGATTGGGTTATTAGGATTGCTGTGTTCTGCATTGAGAGGAACTTCCTTTTGAGGAAGAGGGTCTTGTATTTTGTCTATGGTGTCAGGAAGGCTGTTCAGAATTGTGTTTGGTTGGGGCTTGTGTTGATTGCGTGGCATTTGTTGTTTGACAAGAGGGTGCAGAGGGAGACACGCAGTGATTTCCTCGAGTATTTCACTAAGGTGTTGGTGTGTTTCCTTGTGGGGACTTTGGTGTGGTTGTTGAAGACTCTTGTGGTTAAGGTGTTGGCCTCTTCTTTCCATGTGAGTACCTACTTTGATAGGATTCAGGAGTCGCTGTTTAATCAGTTTGTGATTGAGACGCTTTCGGGCCTTCCTTTGGTGGAGATTCAGAAGGCTGAGGAGGAGGAGGAGAGGCTTGCTGATGAGGTTCAGAAGCTGCAGAATGCTGGGGTTACCATACCCCCTGACCTTAGGGCATCTGCTTTTTCTAATATTAAGAGTGGGAGGCTGAGGAGTGGAATGCTGTCCAAAAGCCCCAGAGTTAAGAGTGGCAAGTTTTCGCGGCCACTTTCCAAGAAGTCCGAAGAGGTGAATGTGATCACTATTGATAACCTGCATAAGCTGAATCCCAATAACATCTCTGCCTGGAATATGAAAAGGTTGATGAACATGGTCCGACATGGGGCTCTTACTACCCTGGATGAACAAATACTTGATAACGCGAATGATGATGAGAATGCCACGCAAATTAGAAGTGAAAACGAGGCAAAAGCTGGAGCTAAGAAAATATTTCAAAATGTTGCTAGGCGCGGGTGCAGGTATATATACCCAGATGACTTGATGCGGTTTATGCGAGAAGATGAAGCTGCGAAGACCATGAATCTCTTTGAAGGAGCGTCTGATTCTGGGAGAATCAGCAAATCAGCCTTGAAGAACTGGGTGGTCAATGCCTTCAGGGAAAGGAGAGCACTTGCTTTGACATTGAATGACACCAAAACGGCTGTGAACAAACTTCATCGAATGCTCAATTTTATAGTTGCAATTGTTATACTGGTTATTTGGCTCTTGATATTGGAACTTGCCACCACCAAATTTCTTCTCTTTGTGAGCTCACAGATTGTCGTGGTTGCATTTATATTTGGAAACACCTGCAAGACCATATTTGAAGCGATTATTTTCTTATTTGTCATGCACCCATTTGATGTGGGAGACAGGTGTGACATTGATGGGGTTCAGATGGTGGTAGAAGAAATGAACATATTGACAACCATATTTCTGAGATTTGATAATCAAAAGGTCATCATCCCTAACAATGTCCTTGCTACCAAGGCCATACATAACTATTACCGGAGTCCTGACATGGGAGATGCTATCGAATTCTATATACATATAGCTACCCCAATTGAAAAGATTTCAGTCATTAAACACAGAATACAAAGTTACATTGATAACAAGAAGGAGCACTGGTATCCTTCACCTTTAATTGTAATAAGGGATTATGACCAACTAAACATGTTTAAAATGGCTGTCTGGCCAACTCATAGAATGAACTTCCAGGACATGGGAGAAAGGTTTGTGAGGAGATCCCTTTTGCTTGAAGAGATGTTAAAGATTTTCAGGGAGCTTGACATTAATTACCGTCTCTTGCCCCTGGACATTAACGTGAGAGCCACGCCTACCTCTTCTGATCGGCTTCCACCTAGTTGGGCATTAGTTCCAAGTTGA 2763 0.4796 MERKSFKSYGSYNKHSKRFSGAGNTDSDHEQLPILFDQETHLHNAMSAGDYVVKISDDGRDAPQGSKFWRESSYDFWNGDGSTTTAAGGSDESFDFRHSEDPPSQLIGRFLHKQRASGEMQLDMDLEMEELQRDADDGKLTPVEESPVTHRVSRELKVSFDEPASNVNLLHEAQNDAVRRRHSKDSPSLSEFQRPPQPPQYDRRRSSSQSPAGDGEVLRCTSNASFERNLSMQRKSALLKAKTRSRLMDPPEEPDRKSGRVLKSGQLLSGFLGRRNDDEEDDPFLEEDLPDEFKETHFSLWTLLEWLSLILIIGLLVTTLCVPILRDKDLWQLRLWKWEVMVLVLICGRLVSDWVIRIAVFCIERNFLLRKRVLYFVYGVRKAVQNCVWLGLVLIAWHLLFDKRVQRETRSDFLEYFTKVLVCFLVGTLVWLLKTLVVKVLASSFHVSTYFDRIQESLFNQFVIETLSGLPLVEIQKAEEEEERLADEVQKLQNAGVTIPPDLRASAFSNIKSGRLRSGMLSKSPRVKSGKFSRPLSKKSEEVNVITIDNLHKLNPNNISAWNMKRLMNMVRHGALTTLDEQILDNANDDENATQIRSENEAKAGAKKIFQNVARRGCRYIYPDDLMRFMREDEAAKTMNLFEGASDSGRISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFIVAIVILVIWLLILELATTKFLLFVSSQIVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCDIDGVQMVVEEMNILTTIFLRFDNQKVIIPNNVLATKAIHNYYRSPDMGDAIEFYIHIATPIEKISVIKHRIQSYIDNKKEHWYPSPLIVIRDYDQLNMFKMAVWPTHRMNFQDMGERFVRRSLLLEEMLKIFRELDINYRLLPLDINVRATPTSSDRLPPSWALVPS 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00179 920 Coils Coil 472 495 - -
Pumo3g00179 920 Pfam Mechanosensitive ion channel 687 890 IPR006685 GO:0016020|GO:0055085
Pumo3g00179 920 MobiDBLite consensus disorder prediction 80 103 - -
Pumo3g00179 920 MobiDBLite consensus disorder prediction 174 188 - -
Pumo3g00179 920 MobiDBLite consensus disorder prediction 133 152 - -
Pumo3g00179 920 MobiDBLite consensus disorder prediction 245 259 - -
Pumo3g00179 920 MobiDBLite consensus disorder prediction 200 218 - -
Pumo3g00179 920 FunFam Predicted mechanosensitive ion channel 745 794 - -
Pumo3g00179 920 MobiDBLite consensus disorder prediction 240 259 - -
Pumo3g00179 920 SUPERFAMILY Sm-like ribonucleoproteins 735 794 IPR010920 -
Pumo3g00179 920 MobiDBLite consensus disorder prediction 167 218 - -
Pumo3g00179 920 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 117 915 IPR016688 -
Pumo3g00179 920 MobiDBLite consensus disorder prediction 1 30 - -
Pumo3g00179 920 Gene3D - 745 794 IPR023408 -
Pumo3g00179 920 PIRSF Memb_At2g17000 37 920 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00179 Pumo-Chr3 2321721 2325996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00179 50 916 Mechanosensitive Ion Channel Family AT1G78610 57.569 0.0 940
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00179 K22048 - gmx:100789882 1537.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00179 3 2321721 2325996 Pumo3g00179 3 2321721 2325996 ECH