Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00178 ATGGTGATGATGGTGACGGAGGGAAACGACAGCAGCGGAGTGCAGCACCATACGACGTCGTCGTCCTCCTCGCCGGCGCAGAGCCGGCAACAGCGGCAGAAGGTAGAAGTGTACAATGAGATTCTTCGCCGGTTGAAGGACTCCGGCCACGAAGAAGCTATGCAACCTGGCTTCCACGATCAGCTTTGGGCTCACTTCAATCGCCTTCCTACACGGTATGCGCTGGATGTGAATGTGGAAAGGGCGGCAGATGTTCTTATGCACAAGAGATTGTTGCATTTGGCACATGATCCTGCTAACAGGCCTTCAATTGAAGTTCGATTAGTTCAGGTTCATCCCATATCCGATGGAAACTCAGCTGACACTTTTGAATCAGATGATCCTGGGATAGAATCTGGTCAAAGTTCTTCAAAGTACTCAAGCAGACAGAGTATACATCCACCTCCTGCTTTTGGTTCTTCTCCTAATCTTGAGGCACTGGCTCTTGAAGCAAATAATTCTGAAGACATAGAAGAGGAACAATCTGTACATGCCAATGTTCAATATTCACGGCCCATGCATGAAATCACCATCTCAACAGATGACAAGCCCAAGCTTCTCAGTCAGTTAACTGCTTTGCTTGCTGAGATTGGACTGAACATCCAAGAAGCACATGCCTTTTCCACAACTGATGGTTACTCATTAGATGTGTTTGTTGTTGAAGGATGGCCCTATGAGGAAACAGAAAAGCTTAAAGAAGCATTGGAAAGAGAAGTCTTGAAGAAGATTGAGAGACAGGTGAGGTCCAGTTCGCAATCCGTATCTTCTGTTGACCAGCCTGATCAAGCAAAGATGAAAAGCGAACTGGATCATTTGACAATACCAAATGATGGGACAGATGTTTGGGAAATAGATCCTAAACATTTGAAATATGGAACTCAAATTGCTTCTGGGTCATATGGTGAACTATTTAGAGGTGTATATTGTAGCCAGGAAGTAGCCATCAAAGTTCTCAAGGCTGAGCATGTAAATTCAGAATTGCAGAGAGAGTTCGCACAGGAAGTCTATATCATGAGAAAGGTTCGACACAAGAATGTTGTACAATTCATAGGAGCATGTACCAAGCCCCCACGCTTATGCATAGTAACAGAATTTATGTCTGGTGGAAGTGTGTATGACTACCTACATAAGCAGAAGGGCTTTTTTAAATTTCCTACCCTGCTCAAAGTAGCGATTGATGTTTCTAAAGGAATGAACTACTTGCACCAACATAACATAATCCATAGAGACTTGAAGGCTGCCAACCTTTTGATGGATGAAAATTGTACTGTAAAGGTCGCTGATTTTGGGGTTGCTAGAGTTAAAGCTCAATCTGGCGTCATGACAGCAGAAACTGGAACATATCGATGGATGGCTCCTGAGGTTATAGAACACAAGCCGTATGATCACAAGGCTGATGTATTTAGTTTTGGAATTGTTTTATGGGAATTGCTCACCGGAAAGCTTCCATACGAATATTTAACCCCCCTACAGGCAGCTATAGGAGTGGTTCAAAAGGGTTTACGACCCACCATCCCCAAGAACACTCATCCAAAGTTTGTTGAGCTTCTTGAGAGGTCTTGGCAGCAAGATCCAACATTGAGACCCGATTTCTCCGAAATTATCGAGATCCTACAGCAGTTAGCAAAGGAGGTTGGAGATGGAGAGGAGCGGCACAAGGATAAATCTGGAGGACTACTGTCAGTCCTCAGACGAGGACATCACTAA 1746 0.4439 MVMMVTEGNDSSGVQHHTTSSSSSPAQSRQQRQKVEVYNEILRRLKDSGHEEAMQPGFHDQLWAHFNRLPTRYALDVNVERAADVLMHKRLLHLAHDPANRPSIEVRLVQVHPISDGNSADTFESDDPGIESGQSSSKYSSRQSIHPPPAFGSSPNLEALALEANNSEDIEEEQSVHANVQYSRPMHEITISTDDKPKLLSQLTALLAEIGLNIQEAHAFSTTDGYSLDVFVVEGWPYEETEKLKEALEREVLKKIERQVRSSSQSVSSVDQPDQAKMKSELDHLTIPNDGTDVWEIDPKHLKYGTQIASGSYGELFRGVYCSQEVAIKVLKAEHVNSELQREFAQEVYIMRKVRHKNVVQFIGACTKPPRLCIVTEFMSGGSVYDYLHKQKGFFKFPTLLKVAIDVSKGMNYLHQHNIIHRDLKAANLLMDENCTVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKNTHPKFVELLERSWQQDPTLRPDFSEIIEILQQLAKEVGDGEERHKDKSGGLLSVLRRGHH 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00178 581 CDD STKc_MAP3K-like 308 551 - -
Pumo3g00178 581 FunFam Serine/threonine-protein kinase isoform 1 292 380 - -
Pumo3g00178 581 Gene3D - 185 259 - -
Pumo3g00178 581 ProSiteProfiles ACT domain profile. 188 265 IPR002912 -
Pumo3g00178 581 SMART serkin_6 302 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00178 581 Pfam Protein tyrosine and serine/threonine kinase 302 551 IPR001245 GO:0004672|GO:0006468
Pumo3g00178 581 Gene3D Transferase(Phosphotransferase) domain 1 381 571 - -
Pumo3g00178 581 MobiDBLite consensus disorder prediction 1 34 - -
Pumo3g00178 581 SUPERFAMILY Protein kinase-like (PK-like) 286 551 IPR011009 -
Pumo3g00178 581 MobiDBLite consensus disorder prediction 559 581 - -
Pumo3g00178 581 ProSiteProfiles Protein kinase domain profile. 302 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00178 581 CDD ACT_TyrKc 186 253 - -
Pumo3g00178 581 MobiDBLite consensus disorder prediction 117 155 - -
Pumo3g00178 581 Coils Coil 238 258 - -
Pumo3g00178 581 Gene3D Phosphorylase Kinase; domain 1 292 380 - -
Pumo3g00178 581 SUPERFAMILY ACT-like 186 250 IPR045865 -
Pumo3g00178 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Pumo3g00178 581 PRINTS Tyrosine kinase catalytic domain signature 413 431 IPR001245 GO:0004672|GO:0006468
Pumo3g00178 581 PRINTS Tyrosine kinase catalytic domain signature 478 500 IPR001245 GO:0004672|GO:0006468
Pumo3g00178 581 PRINTS Tyrosine kinase catalytic domain signature 522 544 IPR001245 GO:0004672|GO:0006468
Pumo3g00178 581 PRINTS Tyrosine kinase catalytic domain signature 459 469 IPR001245 GO:0004672|GO:0006468
Pumo3g00178 581 PRINTS Tyrosine kinase catalytic domain signature 376 389 IPR001245 GO:0004672|GO:0006468
Pumo3g00178 581 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 45 557 - -
Pumo3g00178 581 MobiDBLite consensus disorder prediction 128 150 - -
Pumo3g00178 581 FunFam serine/threonine-protein kinase HT1 381 571 - -
Pumo3g00178 581 MobiDBLite consensus disorder prediction 8 34 - -
Pumo3g00178 581 MobiDBLite consensus disorder prediction 559 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00178 Pumo-Chr3 2269389 2280877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00178 29 580 MAP Kinase Kinase Kinase AT4G35780 67.210 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Pumo3g00178 PK_Tyr_Ser-Thr 4.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00178 - - gmx:100805180 1099.35