Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00176 ATGGCGCGCGGAAGGAAGAAGCGGCATGGGAACAACACAGCCATTATTCCTGTGGATGCAAACCCCACTCAGCAAAAAACACAGTTTTTGGATACTGATTCTGATGAGTGTGAGACCAAAAGGATGAAATTTACTGAGAACAATGGTGATGGAGCAGGGGGTTCTTCCTCTGTTAAAGAAGTTGTGAAAAAGAAGCGTGGCAGAAAAAGTAAAAAGGAGAAGGAGGACATGCAAAAGATGTTAGAGGAGAAAGATGCTCAAAACGAAGACCACGGTGAAAATGGTGGAGTCGGAGGTTCTTCTTCTGTTCAAGTAAGTGTGAAAAAGAAGCGTGGAAGAAAGAGTAAAAAGGAGAAGGAGGACATGGAAAAGAAGATGTTAGAGGAGAAAGATGCTCAAAACGAAAACCACGGTGAAAATGGTAGAGTAGGAGGTTCTTCTTCTGTTCAAGAAGGTGTAAAAAAGAAGCGTGGCAGAAAGAGTAAAAAGGAGAAGGAGGACATGGAAAGGAAGAAGATGCTAGAGGGCAATTTGTTGGAGGAGAAAGATGCTCAAGACGAAAACCACGGTGAGAATGGTGGAGTAGGAGGTTCTTCTTCTGTTCAAGAAGGTGCAAAAAAGAAGCGTGGCAGAAAGAGTAAAAAAGAGAAGGAGGACATGGAAAAGAAGAAGATGTTAGAGGGCAATTTGTTGGAGGAGAAAGATGCTCAAAACGAAAACCACAGTGAAAATGGTGGGGTAGGAGGTTCTTCTTCTGTTCTAGAAGGTGTGAAGAAGAAGCGTGGCAGAAAGAGTATAAAGGAGAAGGAGGACATGGAAAGGAAGGAGATGTTAGAGGGCAATTTGTTGGAGGAGAAAGATGTTCAAGACGTTAACTGTGGTGAAAATGGTGGGGTAGGAGGTTCTTCTTCTGTTCAAGAAGTTGTGAAAAAGAAGCGTGGCAGAAAGAGTATAAAGGAGAAGGAGGACATGAAAAGGAAGGAGATGTTAGAGGGCAATTTGCTGGAGGAGAAAGATATTGAAGACGTTAGCCGTGGTGAAAATGGTGGGGTAGGAGGTTCTTCTACTGTTCAAGAAGTTGTGAAAAAGAAGCGTGGCAGAAAGAGTATAAAGGAGAAGGAGGACATGAAAAGGAAGAAGATTTTAGAGGGCAATTTGTTGGAGAAGAAAGATGTTCAAGACGTTAATGGTGAAAATGGTGGGGTACCTGAGAAGAGGCGCGGAAGAAAAAGAAAGATGCTTAAGGAAGATGATGGTGAGTTTGAAATGCCTGAAGATTCTTCAGGAAGTGGCATTCAGAAACAATATAGTCTTAGGGCCCCTAAAGACAATATAGAAGAGGAGATGCCAAAAATCAACAAGAGAGATCCTAAGTGGATAGAAGAGGAGTCCTTAATGTGTCATCAATGTCAGAGAAATGATAAAGGCAGGGTTGTGAGGTGCACAAAATGTAAGAGGAAAAGATTTTGCGTACACTGTATACAAAATTGGTATCCTCATTTGAAAGAGGATTATATTGCTGAGGCATGTCCTGTGTGCCGTGGTAATTGCAACTGCAAAGCATGCTTGAGATCTGATGAACTTATTAAAAAAATGAAGAAGAAAACAAAAACCATTGAAGATGAGAAGGTTGAACTCTCTATGCATTTGCTGCAAGTACTTCTTCCGTATTTAAGGCTGTTAGATGAAGAACAGATGATTGAGAATGAGACAGAAGCTAAGATACAGGGGCACTCAGTCTCAGAGTTAAATATAGTACAGGCAGATTTCTCTGAAGATGAGCTGACAACTGCAAAACGTCAATATTTGATCACCACAGAAGCTGTACAAAATGCTCTTTTGACCTTTGTCTCATCTGTTGCCGTGAGCTTCGTAACAGGCAGCTTTCATCTTTATTTTGATAAGCATCATATTCATCTTCTTAGACCTAGGGTTTTCTCCTTATCATATCATCTTAAAAATTTATCTCAATTTCTTGCTGTCTATTGTCCCTGCCCGTTTTGCTGTTCTCACTTTGCCTACCCAGACCCTTTCTTGTTGCCTTTGCATTCTGGTTTTCTTTTGGTAAATGTGTTGACTCATATTGCTGAAGTGAAATTGGAACCAAAGCATCTTATTGCCATTGAGAAGTTGAAACAAAAGCACTTTGAGCAAGACAAAAGGGAGCTATTTGGTGATGATCAGAATAGAGAAACTAATGTTGACAAACTTAATAATTCATCTTCTACCATAAATGCTTTGGACAAGCAAAATAGTGTCCAAGTCATGGAACACAAAGGTGGATTATGTGATGGGAAAGAAGTTGATCAGTTCCATCAACCCTCTGGTGGTAATGAGGTTGCCATTGCTAATGAGGGTGATCTTTCATGCGGATCAGAGCTTAAAGAGGTTGACAAAGTAAAAATAAAGCAAGAAAGTGATATGTTGTTTGCGGGGGATGGTTCAGAAGGTGCTCTCTGGGATATTTTTCGGAGGCAGGATGTACCTAAATTGCAGGAATATCTGATGAAGCATTTCAGAGAGTTCAGGCATGTCCATTGCTGTCCTTTAAAACAGGTTATTCACCCCATCCATGACCAGACCTTTTATCTGACTGTGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTATTCAGAAGGTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTATTAAGGTTGCACTGGATTTTGTCTCTCCAGAAAATGTTGGGGAGTGCTTTCGTTTGACAGAGGAATTTCGCACACTTCCAATAAACCACGGGTCTAGTGAGGACAAATTGGAGGTGAAGAAGATGACAATATATGCTATGCAAGATGTGATCGGAAAATTGGAGGAAGCAAGGTCCGGGAAAACCAAGGTTCCGGAGTAA 2922 0.4124 MARGRKKRHGNNTAIIPVDANPTQQKTQFLDTDSDECETKRMKFTENNGDGAGGSSSVKEVVKKKRGRKSKKEKEDMQKMLEEKDAQNEDHGENGGVGGSSSVQVSVKKKRGRKSKKEKEDMEKKMLEEKDAQNENHGENGRVGGSSSVQEGVKKKRGRKSKKEKEDMERKKMLEGNLLEEKDAQDENHGENGGVGGSSSVQEGAKKKRGRKSKKEKEDMEKKKMLEGNLLEEKDAQNENHSENGGVGGSSSVLEGVKKKRGRKSIKEKEDMERKEMLEGNLLEEKDVQDVNCGENGGVGGSSSVQEVVKKKRGRKSIKEKEDMKRKEMLEGNLLEEKDIEDVSRGENGGVGGSSTVQEVVKKKRGRKSIKEKEDMKRKKILEGNLLEKKDVQDVNGENGGVPEKRRGRKRKMLKEDDGEFEMPEDSSGSGIQKQYSLRAPKDNIEEEMPKINKRDPKWIEEESLMCHQCQRNDKGRVVRCTKCKRKRFCVHCIQNWYPHLKEDYIAEACPVCRGNCNCKACLRSDELIKKMKKKTKTIEDEKVELSMHLLQVLLPYLRLLDEEQMIENETEAKIQGHSVSELNIVQADFSEDELTTAKRQYLITTEAVQNALLTFVSSVAVSFVTGSFHLYFDKHHIHLLRPRVFSLSYHLKNLSQFLAVYCPCPFCCSHFAYPDPFLLPLHSGFLLVNVLTHIAEVKLEPKHLIAIEKLKQKHFEQDKRELFGDDQNRETNVDKLNNSSSTINALDKQNSVQVMEHKGGLCDGKEVDQFHQPSGGNEVAIANEGDLSCGSELKEVDKVKIKQESDMLFAGDGSEGALWDIFRRQDVPKLQEYLMKHFREFRHVHCCPLKQVIHPIHDQTFYLTVEHKRKLKEEYGIEPWTFIQKVGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPINHGSSEDKLEVKKMTIYAMQDVIGKLEEARSGKTKVPE 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00176 973 MobiDBLite consensus disorder prediction 360 377 - -
Pumo3g00176 973 Coils Coil 115 136 - -
Pumo3g00176 973 MobiDBLite consensus disorder prediction 214 240 - -
Pumo3g00176 973 MobiDBLite consensus disorder prediction 392 419 - -
Pumo3g00176 973 MobiDBLite consensus disorder prediction 71 91 - -
Pumo3g00176 973 MobiDBLite consensus disorder prediction 256 291 - -
Pumo3g00176 973 MobiDBLite consensus disorder prediction 162 189 - -
Pumo3g00176 973 Coils Coil 70 94 - -
Pumo3g00176 973 MobiDBLite consensus disorder prediction 392 433 - -
Pumo3g00176 973 FunFam Transcription factor jumonji (JmjC) domain-containing protein 748 940 - -
Pumo3g00176 973 Pfam JmjC domain, hydroxylase 818 914 IPR003347 -
Pumo3g00176 973 Gene3D Cupin 686 939 - -
Pumo3g00176 973 MobiDBLite consensus disorder prediction 31 45 - -
Pumo3g00176 973 SMART cupin_9 633 931 IPR003347 -
Pumo3g00176 973 MobiDBLite consensus disorder prediction 116 137 - -
Pumo3g00176 973 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 462 529 IPR018866 -
Pumo3g00176 973 MobiDBLite consensus disorder prediction 16 30 - -
Pumo3g00176 973 ProSiteProfiles JmjC domain profile. 556 931 IPR003347 -
Pumo3g00176 973 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 689 966 IPR045109 GO:0032454|GO:0033169
Pumo3g00176 973 MobiDBLite consensus disorder prediction 1 377 - -
Pumo3g00176 973 MobiDBLite consensus disorder prediction 308 345 - -
Pumo3g00176 973 ProSiteProfiles Zinc finger RING-type profile. 467 514 IPR001841 -
Pumo3g00176 973 SUPERFAMILY Clavaminate synthase-like 819 951 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00176 Pumo-Chr3 2232157 2248810 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pumo3g00176 JmjC 3.7e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00176 K15601 - gmx:100805723 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00176 3 2232157 2248810 Pumo3g00176 3 2232157 2248810 ECH