Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00172 ATGGAGAACGACACCACCGCCGCCGCCGCTAACAATAACACCACCACCACCACCGCCACCGCGAAAGCAGGTTCCGGAGGAGTGAAATCGAACAACCATAACCTAGAAGAGGAGCATTCCAATTTGAATGGCGAGGAGCACATGGCAGAACAAGTGGAGGCAGAAGAGGAAGAAGATCGAAAAGCCGATGAAGGCGAAGATGAACCAACTGGATCTGCGGCGCCCAACCCTCGCCAACCTTCGAGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTCGCACTCGCTCGAACCCTTCAGGAGCAGGAAAGGGCATATATGATGCTGAGAATGAATAATGATGGAAGTGATTATGGAAGTTGGGAAGGCGGAAGCCATTTACATGATGATGGGGATGATTTTGATGATCTACATGATGGCACTGATGTGGATGAGGATGATGATGACGAAGATGATGATGATGAAAATGAGGAGTATGAGGATGAAGATGCATTTGATGTCCATGCTCATGCTAGTGCTGGAGAACATGATAATCCCAGCATTGAATTTGACCCAGATGTATTTTCAAGTGATGAAGCATATGCAAGAGCATTACAAGAAGCTGAAGAGAGGGAAATGGCAGCTAGACTGTTGGCTCTTGCTGGGATAAATGATCGGGAGGCGGAGGACATAGAGGAGCATGATGCTAATTCTCCGGATGCTTGGGAGGATGTTGATCCAGATGAACTTTCATACGAGGAATTACTGGCATTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACTATTGCCTGCTTGCCCTCAGTCAACTACAAGACTGGGAGTGATCAACATGGAAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGGTGAGTCCTTGACAGTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCAGTTTGTAGTACCGAGGTATCTGCTTCTGGGAGCAACTTGTAG 1026 0.4737 MENDTTAAAANNNTTTTTATAKAGSGGVKSNNHNLEEEHSNLNGEEHMAEQVEAEEEEDRKADEGEDEPTGSAAPNPRQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSHLHDDGDDFDDLHDGTDVDEDDDDEDDDDENEEYEDEDAFDVHAHASAGEHDNPSIEFDPDVFSSDEAYARALQEAEEREMAARLLALAGINDREAEDIEEHDANSPDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIACLPSVNYKTGSDQHGSNDSCVICRVDYEDGESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00172 341 MobiDBLite consensus disorder prediction 114 165 - -
Pumo3g00172 341 MobiDBLite consensus disorder prediction 74 90 - -
Pumo3g00172 341 MobiDBLite consensus disorder prediction 50 64 - -
Pumo3g00172 341 FunFam E3 ubiquitin ligase BIG BROTHER-related 256 337 - -
Pumo3g00172 341 MobiDBLite consensus disorder prediction 1 90 - -
Pumo3g00172 341 MobiDBLite consensus disorder prediction 137 164 - -
Pumo3g00172 341 ProSiteProfiles Zinc finger RING-type profile. 290 331 IPR001841 -
Pumo3g00172 341 MobiDBLite consensus disorder prediction 1 31 - -
Pumo3g00172 341 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 40 339 IPR043312 -
Pumo3g00172 341 SMART ring_2 290 330 IPR001841 -
Pumo3g00172 341 Coils Coil 35 55 - -
Pumo3g00172 341 MobiDBLite consensus disorder prediction 32 49 - -
Pumo3g00172 341 Pfam Ring finger domain 288 330 IPR001841 -
Pumo3g00172 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 337 IPR013083 -
Pumo3g00172 341 SUPERFAMILY RING/U-box 281 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00172 Pumo-Chr3 2204113 2209914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00172 75 227 C3H Transcription Factor Family AT3G19910 53.548 2.50e-37 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00172 K19045 - gmx:100306465 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00172 3 2204113 2209914 Pumo3g00172 3 2204113 2209914 ECH