Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00168 ATGTCTTCCGGCGGCGGCGGAGCGAAGCCGTTCTTCTGCCACGTGTGCAGTTGCAGGATCACGTGCTCCGATGAGTCGGAACCCTTCTGCCCGATCTGTATGGAAAGCTTCGTGGAAGAATGGAACCCTAACAACCCTAGCCCTAGCCTTATCCCCGAGAGCGAGGAATCTTCGGATCCCGAAATCCCCTTTCACCCCTTCTCCTTGCTCCCTCTCTTGCTCTCCTCCGTTTCCAGGACCCGACCCGAACCCGACATGTTCGACCCGAGGGTCTTCCTCCACAACCACCTTCAGGACCTTCGCGCCGACGGCGCCAACATCCAAGTCGACTTCGACCACCCTTCCGAGCAAGGGTTCCGCCTCCCGGCCAACATCGGCGACTACTTCCTAGGCCCCGGCCTCGAGCAGTTGATCCAGCAGCTCGCTGACAACGACCCCAACCGCTACGGCACGCCGCCCGCCGCCAAGGACGCCGTCGAGAATCTCCCCACCATCACCGTCGACGACGAGTTGCTCAACTCGGAGCTGAACCAGTGCGCGGTCTGCCAGGACGAGTTCGAGAAGGGCTCGCAGGTGACGCAGATGCCCTGCAAGCATGCGTATCACGGTGACTGCTTGATTCCGTGGCTCCGGCTGCATAACTCTTGCCCTGTGTGTCGCTATGAATTGCCCACTGACGACGCGGATTACGAGAATCGATCGCGCAGTGAAGGCGGTGACGGTGACGGTGGGTCGAGGACTGGTGGGAGCGATAGTGGCGGCAGTGGCGGTGCAGGGGGAGGGGGAAGTAATAGACCCGTTCACAGGACCGTTAGAATATATTTGCGGCATCCTGATGCTGGTGGCTCTGCGCAGGACAGTGCTGGATGGGGATGGGGAAGTTGGGATTGA 891 0.6061 MSSGGGGAKPFFCHVCSCRITCSDESEPFCPICMESFVEEWNPNNPSPSLIPESEESSDPEIPFHPFSLLPLLLSSVSRTRPEPDMFDPRVFLHNHLQDLRADGANIQVDFDHPSEQGFRLPANIGDYFLGPGLEQLIQQLADNDPNRYGTPPAAKDAVENLPTITVDDELLNSELNQCAVCQDEFEKGSQVTQMPCKHAYHGDCLIPWLRLHNSCPVCRYELPTDDADYENRSRSEGGDGDGGSRTGGSDSGGSGGAGGGGSNRPVHRTVRIYLRHPDAGGSAQDSAGWGWGSWD 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00168 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 226 IPR013083 -
Pumo3g00168 296 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Pumo3g00168 296 MobiDBLite consensus disorder prediction 228 296 - -
Pumo3g00168 296 SUPERFAMILY RING/U-box 158 226 - -
Pumo3g00168 296 FunFam E3 ubiquitin-protein ligase RING1-like 140 226 - -
Pumo3g00168 296 Pfam Ring finger domain 177 220 IPR001841 -
Pumo3g00168 296 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 83 224 - -
Pumo3g00168 296 SMART ring_2 179 219 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00168 Pumo-Chr3 2162769 2165578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00168 123 235 C3H Transcription Factor Family AT5G01980 47.788 8.08e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00168 K11982 - gmx:100785289 462.996