Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00166 ATGTCGAACTCCGACGGCACCACTAACGGCGGCTCAATCATTGAGGCGCAGCAGAGACAGCAGCAGCCCATAGCCGTTAGGAAGCCGCCCTCCAAGGACCGCCACAGCAAGGTGGACGGCCGCGGCCGCCGCATAAGGATGCCAATCATATGCGCCGCACGTGTCTTCCAGCTCACGCGCGAGCTCGGCCACAAGTCCGACGGTCAAACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACCGGCACCACCCCCGCCAGCTTCTCCTCCGTCTCCCTCTCCGTCCGCGGCGCAGCCTCACTCTCCTCCCCCTCCTCCGCCTCCGACCACAAGCCCCAGTTACTCGCTCCAACTCCCTTCATCCTCGGCAAGCGCATACGCACCGACGAAGACTCCTCTAAAGACGAGGCCGTTTCTGTGGGCCCCTCTACCCCTCCTGGACTGTGGGCCCTCCCGGCCCGGCCCGATTTCGGACAAATTTGGAGCTTCGCTGCTCCCGAAATGGTCGTGCAGCCCGCCGCGGTGTCGGTGTCGCAGCAGCAGCAGCACGCTTCGTTGTTCGCTCATCACCACCGTCAACAACAGCAGCAGCAACAGGCCATCGGAGAAGCTTCGGCGGCGAGGGTGGGGAATTACCTTCCGGGACATCTGAATTTGCTGGCTTCGTTGTCCGGTGGGCCCGGGAATTCTGGTCGGAGAGACGATGAACCTCGTTGA 744 0.6411 MSNSDGTTNGGSIIEAQQRQQQPIAVRKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTGTTPASFSSVSLSVRGAASLSSPSSASDHKPQLLAPTPFILGKRIRTDEDSSKDEAVSVGPSTPPGLWALPARPDFGQIWSFAAPEMVVQPAAVSVSQQQQHASLFAHHHRQQQQQQQAIGEASAARVGNYLPGHLNLLASLSGGPGNSGRRDDEPR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00166 247 MobiDBLite consensus disorder prediction 28 43 - -
Pumo3g00166 247 ProSiteProfiles TCP domain profile. 31 85 IPR017887 -
Pumo3g00166 247 MobiDBLite consensus disorder prediction 1 25 - -
Pumo3g00166 247 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 217 IPR005333 GO:0003700
Pumo3g00166 247 MobiDBLite consensus disorder prediction 1 43 - -
Pumo3g00166 247 Pfam TCP family transcription factor 31 188 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00166 Pumo-Chr3 2141002 2142950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00166 8 247 TCP Transcription Factor Family AT5G23280 64.427 8.43e-94 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo3g00166 TCP 3.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00166 K16221 - gmx:100799005 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00166 3 2141002 2142950 Pumo3g00166 3 2141002 2142950 ECH