Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00142 ATGGCTGAGTGTATATATATTAGTTCGTCAGATGATGACTTGGAGGAGATAGAAGATCCAAGGAGGACTCTTCCGCAATGGGCTACTACTACTGAAAAGAGTTCAGATTCAGGTGGATGGTCTAGGCGGGATAGTGCTTTAAGAGGGGCAAATAGTTCAAACCCTAGCTCTTCTAACGTTTATAATCATTCACAACTCAAGCCCCATACCCTACCTTTGCCCAGCACCACACTGAACCACAGAACTGCACGAAGAGATGAACCTTCATACCATGCCCAGAATGGAAACACAAGTCAGCAACAAACAGTTAATTACCGAATTTCAAATACTCATGGTGCAGATTATGAGAAAATGTCATCTCAGCAAGCTTTCAAGAGGACCCTTCCGTCATCTCTTCAACCTTCTGCAACAAGGGCTCTTCCTTCTTCGTCATTTGCATCAGATAGCAGATTAAGCAACTTAAAAGATAACGTGAGCAGCAGTCAACTTCATGATGCATATAAGAATCGTCGCCATGGAGTTGGACCTAGCACATCCAGTGACAGGGGCTACATTCGTGACAATTTTAGCAGGGGCTATGATGAAGATCGTTTCTTGTATCAAAATGGTGGGAATAGGATTCTTCCTCCATCTTTGATGCTTGGAAAGGGTATAACTCCACAGTTTGCTAGTTCTAGTGAATCTGTGTATCGTTCTGGAGCAGGTGATGAAAGGGCTGCCGAAAATGATGAGAGACTAATTTATGAGGCAGCATTACAGGATATCAGTCAACCTAAAACAGAACATGACTTACCTGCTGGTGTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCGATGATTTCCCTCATCCTGGCACAGAGGTCATTACAGTCAAAATCGAAAACAGATGATACGTGCAATCATAAAACTGAAGCTTTGAATTTGGACGACGACGATGACAATGGTAGTGTAGATGTGGAAAAGAATAAAAATAGTGAAGAATCCGATGATGTAAAGCCTGTTAGAGAACCAAGCAGTTCAACACAGGCACCTGGTAGAAAAAGGCCAGCTGCTGGTACACTCGTTGTCTGTCCTGCTAGTGTTCTTCGACAGTGGGCCAGGGAACTTGATGAAAAAGTTGGAGATGAAAAGCTTTCTGTTTTGGTTTACCATGGGGGCAGTAGGACAAAGGATCCTGTTGAACTTGCAAAATTTGATGTTGTTCTAACAACATACTCTATTGTGACTAATGAAGTTCCCAAGCAACCATTAGTTGAGGAGGATGATATTGATGAAAAAAATGGGGAAAGATTTGGGTTATCCTCTGAGTTTTCTGTTAGTAAAAAGAGGAAAAAGCCATTTAATGGAAATAAGAAGAGTAAAAAAGGTGGAAAAGGAATTGACAGTTCTTCTATTGAATGTGGTTCTGGTACTCTTGCAAAAGTAGGTTGGTTTAGAGTCATTCTAGATGAGGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCATGCTGCAGCCTTAGAGCCAAAAGAAGGTGGTGCTTATCTGGAACACCTATTCAAAATACTATTGATGATTTGTATAGCTACTTTAGGTTCCTAAAGTATGATCCTTATGCTGTATATAAATCATTCTACAATACAATAAAAGTTCCAATATCCAGAAATTCTATTCAAGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGGAAGCCAATAATCACTTTGCCTCCCAAAACAATTGAGCTCAGCAAGGTGGATTTCTCCACCGAGGAGCGGGCTTTTTACATGAAGTTGGAATCAGACTCACGTTCTCGATTTAAGGCATATGCTGCTGCTGGGACAGTGAACCAAAACTATGCTAATATTCTTTTAATGCTTTTACGTCTCCGACAGGCCTGTGACCACCCGCTTCTTGTTAAAGATTATGATTCTGATCCTGTTGGGAAAGATTCTGTTGAAATGGCAAAAAATCTTCCAAGGGAAATGCTGATTAATCTGTTTAATCGTTTGGAAGCAACCTTTGCTATATGTCATGTTTGCAATGATACCCCTGACGACCCTGTTATTACGATGTGTGGCCATGTCTTCTGTTATCAATGTGTGTCAGAACATTTGACTGGTGATGATAATACATGTCCTGCAGTTAATTGTAAAGAACTAATTGGTGACGATCTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGCATATCTGATGATGGTGGCAGTGTTAGTTCTGCAAATTCACATCTTTGTGATTATTCACTAGTGCAACAGCCTGACTACACTTCATCTAAAATCAAAGCTGTTCTTGAGGTTCTGCAGTCAAATTGTAACTTGAACATTTCTAGTTCTGACTTTCCAAACTCCTCTGGAGGTTGTAGAGAATCACTGTCTTCTGATAATTTATATGTTGAAGACCGTGATTCAGATGTTAGGGTTACAAAACACACAAGAAAGTATTTAGAATCCACAACTGAAGGACCAATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGACTTAGTTGAGACATCGTTGACACAATTTGGTATACAGTTCCGGAGACTTGATGGTAGGATGACTCTGGGTGCGAGGGACAGAGCTGTTAAGGATTTCAATACCGAACCTGAGATAACTGTAATGCTGATGTCACTAAAGGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACAACCGAAGATCAAGCTATTGATCGTGCTCATAGAATTGGACAAACTCGTCCTGTTACTGTGACACGGATCACTATAAAAGATACAGTTGAAGATAGGATACTGGCTCTTCAGGATGAAAAGAGAAAAATGGTTGCAGCTGCTTTTGGGGAAGACCATGCTGGCGGTTCTGGAACTCGCCTTACAGTGGATGATCTGAAATATCTTTTCATGGTCTAG 3075 0.4085 MAECIYISSSDDDLEEIEDPRRTLPQWATTTEKSSDSGGWSRRDSALRGANSSNPSSSNVYNHSQLKPHTLPLPSTTLNHRTARRDEPSYHAQNGNTSQQQTVNYRISNTHGADYEKMSSQQAFKRTLPSSLQPSATRALPSSSFASDSRLSNLKDNVSSSQLHDAYKNRRHGVGPSTSSDRGYIRDNFSRGYDEDRFLYQNGGNRILPPSLMLGKGITPQFASSSESVYRSGAGDERAAENDERLIYEAALQDISQPKTEHDLPAGVLSVSLLRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMISLILAQRSLQSKSKTDDTCNHKTEALNLDDDDDNGSVDVEKNKNSEESDDVKPVREPSSSTQAPGRKRPAAGTLVVCPASVLRQWARELDEKVGDEKLSVLVYHGGSRTKDPVELAKFDVVLTTYSIVTNEVPKQPLVEEDDIDEKNGERFGLSSEFSVSKKRKKPFNGNKKSKKGGKGIDSSSIECGSGTLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLLDGKPIITLPPKTIELSKVDFSTEERAFYMKLESDSRSRFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYDSDPVGKDSVEMAKNLPREMLINLFNRLEATFAICHVCNDTPDDPVITMCGHVFCYQCVSEHLTGDDNTCPAVNCKELIGDDLVFSKATLRSCISDDGGSVSSANSHLCDYSLVQQPDYTSSKIKAVLEVLQSNCNLNISSSDFPNSSGGCRESLSSDNLYVEDRDSDVRVTKHTRKYLESTTEGPIKAIVFSQWTSMLDLVETSLTQFGIQFRRLDGRMTLGARDRAVKDFNTEPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQDEKRKMVAAAFGEDHAGGSGTRLTVDDLKYLFMV 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00142 1024 Gene3D - 790 1023 IPR027417 -
Pumo3g00142 1024 Gene3D - 468 615 IPR038718 -
Pumo3g00142 1024 Gene3D - 246 333 IPR038718 -
Pumo3g00142 1024 SMART helicmild6 883 966 IPR001650 -
Pumo3g00142 1024 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 49 1023 - -
Pumo3g00142 1024 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 366 453 - -
Pumo3g00142 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 602 IPR027417 -
Pumo3g00142 1024 MobiDBLite consensus disorder prediction 348 366 - -
Pumo3g00142 1024 MobiDBLite consensus disorder prediction 1 77 - -
Pumo3g00142 1024 Pfam Helicase conserved C-terminal domain 865 966 IPR001650 -
Pumo3g00142 1024 CDD SF2_C_SNF 859 975 - -
Pumo3g00142 1024 Pfam SNF2-related domain 276 679 IPR000330 GO:0005524|GO:0140658
Pumo3g00142 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 706 768 IPR013083 -
Pumo3g00142 1024 ProSiteProfiles Zinc finger RING-type profile. 718 757 IPR001841 -
Pumo3g00142 1024 SUPERFAMILY RING/U-box 716 762 - -
Pumo3g00142 1024 Gene3D - 370 456 IPR038718 -
Pumo3g00142 1024 SMART ring_2 718 756 IPR001841 -
Pumo3g00142 1024 MobiDBLite consensus disorder prediction 116 186 - -
Pumo3g00142 1024 MobiDBLite consensus disorder prediction 46 77 - -
Pumo3g00142 1024 MobiDBLite consensus disorder prediction 326 341 - -
Pumo3g00142 1024 ProSitePatterns Zinc finger RING-type signature. 733 742 IPR017907 -
Pumo3g00142 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 1023 IPR027417 -
Pumo3g00142 1024 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 853 1019 IPR001650 -
Pumo3g00142 1024 MobiDBLite consensus disorder prediction 325 383 - -
Pumo3g00142 1024 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 481 614 - -
Pumo3g00142 1024 MobiDBLite consensus disorder prediction 116 164 - -
Pumo3g00142 1024 CDD DEXDc_SHPRH-like 273 602 - -
Pumo3g00142 1024 Pfam Zinc finger, C3HC4 type (RING finger) 718 754 IPR018957 GO:0046872
Pumo3g00142 1024 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 288 564 IPR014001 -
Pumo3g00142 1024 SMART ultradead3 269 581 IPR014001 -
Pumo3g00142 1024 MobiDBLite consensus disorder prediction 474 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00142 Pumo-Chr3 1908878 1920809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00142 9 924 RAD5 or RAD16-like Gene Family AT1G50410 56.163 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pumo3g00142 SNF2_N 1.7e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00142 - - gmx:100795142 1826.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00142 3 1908878 1920809 Pumo3g00142 3 1908878 1920809 ECH