Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00141 ATGGCATCATCACAGTCGAGGAAGAGAGTTGACGCCGTCGATTCTCGCGCTGCTTCCGTTCTCGTTCGCGCCAAAGATGGCAGTGCTTTTGCCAGATGCGACGATTGCAAGAAGAATGTGCCGGTGGCACTCATCGACATGCACAGTTGCAGCCTTGAAGCTAAAATTAAAATGAACCTAGATGCTCAAGTTGTGGGACAGGCTGCTGAAGCTAAGAAGCCAGAGAGGAAGAAGCCCAAATCTAAAGAGCCTAAGGCTAAAAAGGCTAAGGTCGAGAAGGGGAAGAAGGTCAAGGATCCTAACATGCCTAAGCGTCCTCCCACAGCCTTCTTTGTCTTCTTGGATGATTTTAGAAAATCTTTCAAGGAAGCTAATCCTGATTCTAAGGATGTTAAAAGGGTTGGTAAAGAGGCTGGTGAAAAGTGGAGGTCTATGACTGATGAAGAGAAGAAGCCTTATTTGGATAAAGTTGCTGAACTTAAGGCAGAGTATGAGAAGGCTATGGAAAGCTATGAAGCTGGCCAAGATGAAGAAGATCAAGCTGGGTCTGATAAGGAAACCTCTGATAAGGAAGCTGCTGCAAAAGAAGCTGAAGAAGAGCTAACTGACGAGGAGTAA 618 0.4595 MASSQSRKRVDAVDSRAASVLVRAKDGSAFARCDDCKKNVPVALIDMHSCSLEAKIKMNLDAQVVGQAAEAKKPERKKPKSKEPKAKKAKVEKGKKVKDPNMPKRPPTAFFVFLDDFRKSFKEANPDSKDVKRVGKEAGEKWRSMTDEEKKPYLDKVAELKAEYEKAMESYEAGQDEEDQAGSDKETSDKEAAAKEAEEELTDEE 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00141 205 Coils Coil 154 177 - -
Pumo3g00141 205 CDD HMG-box_AtHMGB1-like 104 164 - -
Pumo3g00141 205 FunFam high mobility group B protein 7 isoform X1 98 174 - -
Pumo3g00141 205 MobiDBLite consensus disorder prediction 167 197 - -
Pumo3g00141 205 MobiDBLite consensus disorder prediction 66 107 - -
Pumo3g00141 205 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 103 172 IPR009071 -
Pumo3g00141 205 SUPERFAMILY HMG-box 94 179 IPR036910 -
Pumo3g00141 205 MobiDBLite consensus disorder prediction 167 205 - -
Pumo3g00141 205 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 6 199 - -
Pumo3g00141 205 MobiDBLite consensus disorder prediction 123 154 - -
Pumo3g00141 205 MobiDBLite consensus disorder prediction 85 102 - -
Pumo3g00141 205 SMART hmgende2 102 173 IPR009071 -
Pumo3g00141 205 Pfam HMG (high mobility group) box 103 172 IPR009071 -
Pumo3g00141 205 Gene3D High mobility group box domain 98 174 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00141 Pumo-Chr3 1894768 1896427 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pumo3g00141 HMG_box 1.9e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00141 K25507 - gmx:100810345 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00141 3 1894768 1896427 Pumo3g00141 3 1894768 1896427 ECH