Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00125 ATGGTGAACGTGGTGGAATTGCAGAAACAGTTGCAGAGGTGGCAGCAGAGTGGGAATGTCAATGTTGATGCCAATGGAGAACTCATGTATGTCAAGGTCATGACTGATGAGCAGTTAGAAACTCTGAGGAAACAAATAGCAGTTTATGGCACCATTTGTGAGCAACTTATTGAGATGCACAGAACACTCTCAGCTCAACAGGATCTTGCAGGAGTTAGATTGGGAAACATATACTGTGACCCATTGATGACATCTGGTGGGCACAAAATAACATCAAGACAAAGGTGGACACCTACACCTGTGCAGCTACAAATTCTTGAACGTATATTTGATCAGGGAAATGGAACTCCAAGCAAGGAAAAAATCAAGGAGATTACTGCTGAACTGGGCCAGCATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAGAATAGGCGTGCTCGATCCAAAAGAAAACTGCAAAATGTGGCTCCTAGCAACACTGAATCAGAAGTGGACACTGAGGTTGATTCTAAGGATAAGAAGACAAAACCTGAGGAGTTTCAGTCCCAACATAACATCATAACTTCTTCTGGAGGGGCTGAAAAGTTGTGCTTCCAGAACCCTCAAGTATACTCTGACTTGCAGTACTTGAACCCTGATTCTACCAAACCATATAATTCCATGTTCCCATCAGATGGCAGTCTCAAATCCACAAGAAATTTGAGTCATGTGTCTGTTTTTAATGAGGTGCTGTCAAACTCAAGGAGTGAGTATGTAGGTGGAAAAATGGAAGTTACTGGGACTGTGAGCTACAATTTATTCCACCAAACAGGAGATTGCAATCTGGCGGGTTGA 843 0.4235 MVNVVELQKQLQRWQQSGNVNVDANGELMYVKVMTDEQLETLRKQIAVYGTICEQLIEMHRTLSAQQDLAGVRLGNIYCDPLMTSGGHKITSRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEITAELGQHGQISETNVYNWFQNRRARSKRKLQNVAPSNTESEVDTEVDSKDKKTKPEEFQSQHNIITSSGGAEKLCFQNPQVYSDLQYLNPDSTKPYNSMFPSDGSLKSTRNLSHVSVFNEVLSNSRSEYVGGKMEVTGTVSYNLFHQTGDCNLAG 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00125 280 Pfam Homeodomain 93 153 IPR001356 GO:0003677
Pumo3g00125 280 ProSiteProfiles 'Homeobox' domain profile. 89 154 IPR001356 GO:0003677
Pumo3g00125 280 CDD homeodomain 93 154 IPR001356 GO:0003677
Pumo3g00125 280 Gene3D - 95 159 - -
Pumo3g00125 280 MobiDBLite consensus disorder prediction 152 183 - -
Pumo3g00125 280 SUPERFAMILY Homeodomain-like 91 155 IPR009057 -
Pumo3g00125 280 PANTHER WUSCHEL-RELATED HOMEOBOX 13 15 269 IPR044559 GO:0003700
Pumo3g00125 280 SMART HOX_1 91 158 IPR001356 GO:0003677
Pumo3g00125 280 MobiDBLite consensus disorder prediction 167 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00125 Pumo-Chr3 1725283 1727446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00125 29 280 Wox Gene Family AT4G35550 52.045 8.29e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pumo3g00125 Homeodomain 8e-19 CL0123