Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00118 ATGTCTCCTCACCTTTCGGAGCCCAAAAGAACAAAAAAGCATTTGTTTGATATTACCTCAACAAAAATTTACGGCGTCGTTTGTTGCGTCTTCCCCAAAACCCTTTCGTGTGTTGAGGGTTTGAGAGTGAAGGTGCAGAGCAGCAGGCATATCGGGGAAATGGTTCTATCAAACAAGAAACTGAAGCTTAAGCTGAGAGATGAATTAGCCCAACAACAAAACCAAAGCAACTTGAACGCCGCTGAACCTCCTTCATCTTCCAACTCTCTCAAAACTCTTCTGGACTCTGCCACCCCCACAACTACACCCAGATTGTCCAAGAGAGAGAAGCGAAGAAAGCTTCGATCCTCGCAACCTCCACAACAAGCCAACAACAAGGAAACTGAAACAGAGGGTTCGCCCAATAAGAAGAGAAAGAGGAAGGTAGAGGACGATGACGTGGCACCAAATGGGGTTGCTGACACACCAAAGAACAAGAAGAAGAAGAAAGCCAGAACGGCGGAAGAAAACGGTTCTAATGGTGGAGGGAAAATGCCAGAGGCTACAGAGTTAACCAAGTCCAATACAACTACCAGTCAAGACAAAGACGATGGTGATGTTCCTACAAAGGTTTATGTTGGAGGAATTCCCTATTATTCAACTGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATAACTGAAGTTGATTGCATGACATTTCCTGAAACTGGCAAGTTTAGAGGGATTGCCATCATTAGTTTCAAGACTGAAGCAGCAGCCAAAAGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAGCAACTCGAGCCAATAAAGCATCAGATTTTGCTCCAGAAATTTTGGAGGGGTACAATAGAATATATGTTGGAAATTTGTCGTGGGATATAACAGAGGAAGAACTGAGGAAATTCTTCAAAAATTGTGAGATAACGTCGCTACGATTCGGTATGGACAAGGAGACGGGAGAATTTCGAGGGTATGCCCATGTGGATTTCAGTGATAGTCAGTCACTGAAAACAGCACTTACATTGGACCAAAATGTTTTGTTTGGGAGACCTGTCAAGATAAGTTGTGCAGTTCCTTTGAAGAAAAAACCAGGAACACATACAAGCTCTGTGTCCACGGTTAATGGAGCTGATGGTGATAAATCAAGTTCCACAGGAAGTGGCAAGATGAATGGAGCTGAGGGTGATAAATCAAGTTCCACAGGAAGTGGCAAGATGAGGAGGAGGACATGCTATGAGTGTGGTGAGAAAGGACATATTCTTTCAGCATGCCCACAGAAACAAACAGTTGCTGCAACTACAACCTAA 1350 0.4356 MSPHLSEPKRTKKHLFDITSTKIYGVVCCVFPKTLSCVEGLRVKVQSSRHIGEMVLSNKKLKLKLRDELAQQQNQSNLNAAEPPSSSNSLKTLLDSATPTTTPRLSKREKRRKLRSSQPPQQANNKETETEGSPNKKRKRKVEDDDVAPNGVADTPKNKKKKKARTAEENGSNGGGKMPEATELTKSNTTTSQDKDDGDVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMTFPETGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKATRANKASDFAPEILEGYNRIYVGNLSWDITEEELRKFFKNCEITSLRFGMDKETGEFRGYAHVDFSDSQSLKTALTLDQNVLFGRPVKISCAVPLKKKPGTHTSSVSTVNGADGDKSSSTGSGKMNGAEGDKSSSTGSGKMRRRTCYECGEKGHILSACPQKQTVAATTT 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00118 449 MobiDBLite consensus disorder prediction 379 420 - -
Pumo3g00118 449 SUPERFAMILY RNA-binding domain, RBD 197 279 IPR035979 GO:0003676
Pumo3g00118 449 SMART c2hcfinal6 424 440 IPR001878 GO:0003676|GO:0008270
Pumo3g00118 449 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 279 IPR000504 GO:0003723
Pumo3g00118 449 MobiDBLite consensus disorder prediction 75 201 - -
Pumo3g00118 449 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 373 IPR000504 GO:0003723
Pumo3g00118 449 MobiDBLite consensus disorder prediction 377 421 - -
Pumo3g00118 449 CDD RRM1_PHIP1 204 275 IPR034361 -
Pumo3g00118 449 Gene3D - 293 380 IPR012677 -
Pumo3g00118 449 Gene3D - 396 447 - -
Pumo3g00118 449 Pfam Zinc knuckle 423 440 IPR001878 GO:0003676|GO:0008270
Pumo3g00118 449 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 93 276 - -
Pumo3g00118 449 MobiDBLite consensus disorder prediction 130 168 - -
Pumo3g00118 449 Gene3D - 94 287 IPR012677 -
Pumo3g00118 449 ProSiteProfiles Zinc finger CCHC-type profile. 425 440 IPR001878 GO:0003676|GO:0008270
Pumo3g00118 449 SMART rrm1_1 203 275 IPR000504 GO:0003723
Pumo3g00118 449 SMART rrm1_1 298 369 IPR000504 GO:0003723
Pumo3g00118 449 MobiDBLite consensus disorder prediction 75 103 - -
Pumo3g00118 449 SUPERFAMILY Retrovirus zinc finger-like domains 410 443 IPR036875 GO:0003676|GO:0008270
Pumo3g00118 449 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 270 IPR000504 GO:0003723
Pumo3g00118 449 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 366 IPR000504 GO:0003723
Pumo3g00118 449 SUPERFAMILY RNA-binding domain, RBD 291 398 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00118 Pumo-Chr3 1653647 1655798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00118 202 401 Eukaryotic Initiation Factors Gene Family AT2G36660 27.962 5.68e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00118 - - gmx:100817668 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00118 3 1653647 1655798 Pumo3g00118 3 1653647 1655798 ECH