Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00114 ATGATACAGGTTGGGAATTATATTCATAATATGGCAACATTCTTCAGTGGTCTTGTTATTGCTTTTATCAATTGTTGGCAGATTGCATTGATAACATTAGCTACAGGTCCATTTATTGTTGCTGCAGGAGGAATATCAAATATATTCCTCCATAGGCTTGCCGAGAATATTCAAGATGCATATGCTGAAGCAGCCAGCATTGCTGAACAGGCAGTTTCATATATAAGGACCTTGTATGCATTTACAAATGAAACATTGGCTAAATATTCATATGCAACATCACTACAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTTCAAGGGCTTGGCCTTGGTTTTACATATGGGCTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGGCTCTTGATTATACATGGAAAAGCTCATGGTGGTGAAATTATAACAGCTCTGTTTGCTGTGATTCTAAGTGGCTTGGGATTGAATCAAGCAGCGACAAATTTCTACTCATTTGATCAAGGGCGAATAGCTGCCTATAGACTATTTGAGATGATAAGCCGGTCATCCTCATCTTTTAATCATGATGGCAATGCTCCAACTTCTGTGCAAGGAAATATAGAGTTTCGGAATGTTTACTTCAGTTATCTTTCTCGCCCCGAAATCCCTATCTTGAGTGGGTTTTATCTCACGGTTCCTGCTAAAAAAACTGTGGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGGTTCTATGATCCAACATTAGGGGAAGTTCTTTTAGATGGTGAAAATATAAAGAATATGAAACTGGAATGGCTAAGGAGCCAAATAGGACTGGTCACCCAGGAACCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCTTATGGGCGAGATACCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACCTTTATCAGCTCATTAGATAAAGGTTATGACACACAGGTTGGCAGGGCTGGTCTAGCTTTGACAGAAGAGCAGAAAATAAAACTTTCTATTGCAAGAGCTGTGCTTTTAAATCCATCCATTCTTCTGCTCGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGTCTGTTCAGGAGGCTCTTGATCTCCTCATGTTGGGACGCTCAACAATAATAATTGCTCGAAGGCTTAGTCTTATAAAGAATGCTGATTATATAGCTGTTATGGAGGATGGTCAACTTGTTGAGATGGGTACTCATGATGAGTTACTGACCCTGGATGGCTTATATGCAGAGCTTCTTCGATGTGAAGAGGCCACAAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGGAGACTGCAACTTTCCAAATTGAGAAAGATTCTTCAGAAAGTCATAGCTTCAAAGAACCTTCATCTCCTAAAATGATAAAGTCACCCTCTCTTCAGAGAGTTTCTGCCATATTTCGGCCTTCAGATGGCTTCTTTAACTCACAAGAATCACCAAAAATTCAGAGCCCACCATCTGAGAAGTTGATGGAAAATGGCCAGTCTTTAGATTCAGCAGATAAGGAGCCATCAATAAAAAGGCAGGATAGTTTTGAAATGAGACTACCAGAGTTACCAAAGATTGATGTTCAATGTGTGCATCGACAAACATCTAATGGTTCTGACCCAGAATCCCCCGTTTCACCACTTTTAACGTCTGATCCAAAAAATGAACGCTCCCATTCACAGACTTTTAGCAGACCTGATAGTCATTCTGATGATCTTTCGGTGAAAATGAGTGAAACAAAGGATGCAAGCCATCGAAAACAACCCTCAATTTGGAGGCTAGCAGAGCTTAGTTTTGCAGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCTATATTTGGTTCTTTCAATCCCCTTCTTGCTTATGTTATTGGCCTGGTGGTGACAGATTACTATAGAATTAATGAAGCTCAGCACTTACGAGGGGAGATAGACAAATGGTGCTTGATCATTGCCTGCATGGGTATTGTGACAGTCGTTGCCAACTTTTTACAGCATTTCTACTTTGGTATTATGGGGGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTTTCAGCCATGCTTCGCAATGAAACTGGATGGTTTGATGAAGAGGAAAATAGTGCTGACAATTTATCCATGCGCTTGGCCAATGATGCTACATTTGTGCGAGCGGCATTCAGTAACCGACTTTCCATATTTATACAGGACAGTGCTGCAATTATTGTTGCTTTTCTCATAGGTGTTTTGCTGCACTGGCGATTAGCACTTGTGGCTTTAGCAACACTTCCAGTTCTCTGTGTTTCTGCTCTTGCCCAGAAATTGTGGCTTGCTGGATTTTCAAAGGGCATACAGGAAATGCACAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGGAATATTTACACTGTTGTTGCATTTTGTGCTGGTAATAAGGTGATGGAACTCTACCAGTTGCAGTTAAATAAAATATTTAAGCAAAGCTTTCTTCACGGAGTGGCCATTGGTTTTGCATTTGGCTTTTCACAGTTTCTGCTCTTTGCTTGTAATGCCCTTTTACTTTGGTACACTGCAATATGTGTAAATAAGAGTTATGTGGATCTACCTACTGCTCTCAAGGAGTACATGGTTTTCTCATTTGCTACATTTGCCCTTGTGGAGCCTTTTGGGTTGGCTCCTTACATACTTAAGCGACGTAAATCTCTCATGTCAGTGTTTGAAATTATAGATCGTGTGCCTAAGATTGATCCTGATGATAGCTCAGCACTGAAGCCACCCAATGTATATGGAAGCATTGAGCTGAAAAATGTTGATTTTTGTTATCCTTCTCGACCAGAAGTGTTGGTATTAAGCAATTTTAGTCTCAAAGTCAATGGAGGACAAACAATTGCTGTAGTGGGAGTTTCAGGGTCAGGGAAGAGCACAATAATATCTTTGATTGAGAGATTCTATGATCCAGTTGCCGGCCAAGTTTTGCTAGATGGGAGGGATTTAAAGCAATATAATTTGAGATGGTTGAGGAGCCACCTTGGTCTGGTTCAGCAGGAACCAATTATCTTCTCAACAACCATAAGGGAAAACATCATATATGCCAGGCATAATGCCAGTGAAGCTGAAATGAAGGCTGCTGCAGGAATAGCAAATGCTCATCATTTCATTAGTAGCTTGCCTCATGGTTATGACACTCATGTTGGGATGAGAGGTGTTGACTTGACTCCAGGACAAAAACAGAGAATTGCAATTGCAAGGGTAGTGCTTAAAAATGCTCCTATTTTGTTGTTGGATGAAGCTAGTTCATCAATTGAATCTGAGTCAAGCCGAGTGGTGCAAGAGGCTCTAGACACCCTAATAATGGGAAATAAGACCACTATTTTAATAGCACACAGAGCTGCTATGATGAGGCATGTGGACAAGATAGTAGTTCTAAATGGAGGAAGGATAGTGGAGGAGGGGACCCATGATTCATTGGTGGCAAAAAATGGTCTGTATGTCCGATTGATGCAACCTCATTTTGGTAAGGCTTTGCGTCAGCATCGGCTTGTTTAG 3603 0.4085 MIQVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRLLIIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSFNHDGNAPTSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKTVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNMKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDTTMDQIEEAAKIAHAHTFISSLDKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIKNADYIAVMEDGQLVEMGTHDELLTLDGLYAELLRCEEATKLPKRMPVRNYKETATFQIEKDSSESHSFKEPSSPKMIKSPSLQRVSAIFRPSDGFFNSQESPKIQSPPSEKLMENGQSLDSADKEPSIKRQDSFEMRLPELPKIDVQCVHRQTSNGSDPESPVSPLLTSDPKNERSHSQTFSRPDSHSDDLSVKMSETKDASHRKQPSIWRLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTDYYRINEAQHLRGEIDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNETGWFDEEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAIIVAFLIGVLLHWRLALVALATLPVLCVSALAQKLWLAGFSKGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYQLQLNKIFKQSFLHGVAIGFAFGFSQFLLFACNALLLWYTAICVNKSYVDLPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLMSVFEIIDRVPKIDPDDSSALKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTIAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKQYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKAAAGIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDKIVVLNGGRIVEEGTHDSLVAKNGLYVRLMQPHFGKALRQHRLV 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00114 1200 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 204 439 IPR003439 GO:0005524
Pumo3g00114 1200 PANTHER ABC TRANSPORTER B FAMILY 3 639 IPR039421 -
Pumo3g00114 1200 Gene3D ABC transporter type 1, transmembrane domain 569 793 IPR036640 GO:0005524|GO:0016020
Pumo3g00114 1200 Gene3D ABC transporter type 1, transmembrane domain 852 948 IPR036640 GO:0005524|GO:0016020
Pumo3g00114 1200 FunFam ABC transporter B family member 6 798 948 - -
Pumo3g00114 1200 Gene3D - 949 1188 IPR027417 -
Pumo3g00114 1200 SUPERFAMILY ABC transporter transmembrane region 615 936 IPR036640 GO:0005524|GO:0016020
Pumo3g00114 1200 Pfam ABC transporter 225 369 IPR003439 GO:0005524
Pumo3g00114 1200 MobiDBLite consensus disorder prediction 496 526 - -
Pumo3g00114 1200 FunFam ABC transporter B family member 6 568 796 - -
Pumo3g00114 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 940 1187 IPR027417 -
Pumo3g00114 1200 Pfam ABC transporter transmembrane region 633 894 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo3g00114 1200 Pfam ABC transporter transmembrane region 8 154 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo3g00114 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 438 IPR027417 -
Pumo3g00114 1200 FunFam ABC transporter B family member 20 941 1190 - -
Pumo3g00114 1200 Coils Coil 50 70 - -
Pumo3g00114 1200 MobiDBLite consensus disorder prediction 556 579 - -
Pumo3g00114 1200 SMART AAA_5 978 1165 IPR003593 GO:0016887
Pumo3g00114 1200 SMART AAA_5 231 410 IPR003593 GO:0016887
Pumo3g00114 1200 CDD ABC_6TM_Pgp_ABCB1_D1_like 4 179 - -
Pumo3g00114 1200 MobiDBLite consensus disorder prediction 556 604 - -
Pumo3g00114 1200 Gene3D - 194 441 IPR027417 -
Pumo3g00114 1200 FunFam ABC transporter B family member 20 194 441 - -
Pumo3g00114 1200 MobiDBLite consensus disorder prediction 580 604 - -
Pumo3g00114 1200 MobiDBLite consensus disorder prediction 460 533 - -
Pumo3g00114 1200 CDD ABC_6TM_Pgp_ABCB1_D2_like 623 934 - -
Pumo3g00114 1200 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 171 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo3g00114 1200 Gene3D ABC transporter type 1, transmembrane domain 4 455 IPR036640 GO:0005524|GO:0016020
Pumo3g00114 1200 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 628 920 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo3g00114 1200 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 951 1188 IPR003439 GO:0005524
Pumo3g00114 1200 Pfam ABC transporter 969 1117 IPR003439 GO:0005524
Pumo3g00114 1200 SUPERFAMILY ABC transporter transmembrane region 4 183 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00114 Pumo-Chr3 1613184 1622662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00114 3 497 Calmodulin-binding Proteins AT2G36910 45.509 1.45e-125 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00114 K05658 - gmx:100799399 2283.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00114 3 1613184 1622662 Pumo3g00114 3 1613184 1622662 ECH