Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00105 ATGGCGAGGATCAAGGTTTACGAGCTGAGGCAGAAGACGAAGGCTGATCTGTTGACTCAGCTGAAGGACCTCAAGGCCGAGCTTGCCTTGCTTCGTGTTGCGAAGGTCACCGGTGGTGCCCCTAACAAGCTCTCCAAGATAAAGGTGGTGAGGTTGTCGATTGCCCAGGTTTTGACGGTGATTTCTCAGAAGCAGAAGGCTGCATTGAGGGATGCCTACAAGAACAAAAAGTACTTGCCTCTTGATCTCCGCCCCAAGAAGACCAGGGCTATTCGCAGGAGGCTTACTAAGCACCAGGCATCATTGAAGACAGAGAGGCAGAAGAAGAAAGAGACATATTTCCCAATGAGGAAATATGCTATCAAGGTGTAA 372 0.4973 MARIKVYELRQKTKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALRDAYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKETYFPMRKYAIKV 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00105 123 Gene3D - 78 123 - -
Pumo3g00105 123 FunFam 60S ribosomal protein L35 78 123 - -
Pumo3g00105 123 PANTHER 60S RIBOSOMAL PROTEIN L35 1 123 IPR045059 GO:0000463|GO:0022625
Pumo3g00105 123 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Pumo3g00105 123 NCBIfam 50S ribosomal protein L29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Pumo3g00105 123 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Pumo3g00105 123 Coils Coil 14 34 - -
Pumo3g00105 123 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Pumo3g00105 123 CDD Ribosomal_L29_HIP 8 64 - -
Pumo3g00105 123 FunFam 60S ribosomal protein L35 1 77 - -
Pumo3g00105 123 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00105 Pumo-Chr3 1390711 1393035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00105 1 123 Cytoplasmic Ribosomal Protein Gene Family AT2G39390 88.618 3.41e-73 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00105 K02918 - gmx:100801539 226.868