Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00104 ATGGCGGGGATGCAGATGCTACCATATTGCGACGTTGATTCGAGCTTGAGAGGCATGGCCGGTCGCGCCGAGGGTTTCGGCCGCCTCGCCATCGGTGGCCTCCACGGTCCTCTGTATTTCGTCACCACTCTGGCAGATGATGGTCCTGGTTCCCTTCGCGAAGGATGTCGTAGAAAGGAACCGTTGTGGATTGTGTTTGAGGTTTCGGGTACCATTAATCTCTCATCGTACCTGAGTGTGTCGTCATATAAGACAATTGATGGCAGAGGGCAGAGGATCAAATTCACTGGGAAGGGTTTGAGGCTCAAAGAATGTGAACACATAATCATATGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTCGATGGCATTCAAATCAAACCAAATTCTAGCCATATATGGATTGATCGATGCACCCTTCGCGATTACGATGATGGCCTCATAGACATTACAAGACAAAGCACCGATATCACTGTATCTAGGTGTTACTTTGCGCAGCATGACAAGACCATGCTCATTGGAGCTGACCCGACTCATGTTGGTGATAGATGTATCCGGGTGACCATTCACCATTGTTTCTTTGATGGAACACGGCAAAGACAACCTCGCGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGGATATATGCTGTTTGTGCTAGCGTGGAATCCCAGATATACTCTCAATGTAACGTATATGAAGCTGGAACCAGGAAAAAGACTTTTGAATTTTATACTGAGAAGGCGGCTGATAAAGAAGAGCAGAAGTCTGGCTTCATAATATCAGAAGGAGACATGTTTCTGAATGGTGCTGAGCCATGCTTGCTTAGAGAAAACAGAGAAGAGTCCATGTTCCATCCTAGTGAATATTACCCAACATGGACTATGGAAGCAGCTGCACATTCTCTCAGAGAGGTCCTCCAGTTATGTACAGGTTGGCAATCCATTTGTAGGCCAGTAGAAAATATGGTCCTTCAGTAA 1005 0.4617 MAGMQMLPYCDVDSSLRGMAGRAEGFGRLAIGGLHGPLYFVTTLADDGPGSLREGCRRKEPLWIVFEVSGTINLSSYLSVSSYKTIDGRGQRIKFTGKGLRLKECEHIIICNLEFEGGRGHDVDGIQIKPNSSHIWIDRCTLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNVYEAGTRKKTFEFYTEKAADKEEQKSGFIISEGDMFLNGAEPCLLRENREESMFHPSEYYPTWTMEAAAHSLREVLQLCTGWQSICRPVENMVLQ 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00104 334 Pfam Pectate lyase 78 240 IPR002022 -
Pumo3g00104 334 PANTHER PECTATE LYASE 18-RELATED 13 288 IPR045032 GO:0030570
Pumo3g00104 334 Gene3D - 10 316 IPR012334 -
Pumo3g00104 334 PRINTS Pollen allergen Amb family signature 224 243 IPR018082 -
Pumo3g00104 334 PRINTS Pollen allergen Amb family signature 202 221 IPR018082 -
Pumo3g00104 334 PRINTS Pollen allergen Amb family signature 22 39 IPR018082 -
Pumo3g00104 334 SUPERFAMILY Pectin lyase-like 20 301 IPR011050 -
Pumo3g00104 334 SMART amb_all 49 247 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00104 Pumo-Chr3 1385502 1387672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00104 44 332 Polysaccharide Lyase AT3G55140 80.277 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00104 K01728 - gmx:100802068 662.914