Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00088 ATGCCATTTCGAGCTCGCACTGCAACTGAAAGTCTCTGGTGGTCTTTGCACACCGTTTTCAACACTCACCACCCTCACTGTCTTCCCATTCACCGCAACTTCTATTCTTTGGCTTTGTCAAAACCTCAGTTTTCTAGCAATTGCGACGAATTTTTGCCCTGGTTGGAGCGGAAAGCTGGTTCTAGGATTTCGTCCTCACTTTTCATTGCCAATTCTTCGTATGGAAGGTCTTTGTTTGCTTCTAAGACAATACAAACTGGAGATTGCATTTTAAAGATTCCTTACAGAGTGCAAATAACTGCAGATAATCTCCTTCCCGAAATCAGATCTTTGATTGGTGAGGAAGTTGGAAATATTGCGAAACTTGCTATATTTATTCTGATTGAGAAGAAATTGGGTCAGGGCTCTGAGTGGTATCCTTACATCAACTGTCTTCCACAAGAAGAGCTGCATAATACGGTATTTTGGACTGAAAGTGAGTTGGAGATGATTTGTCCAAGTTCAGTTTATCAGGAAACTATTGACCAAAAATCTCAAATTGAAAAGGACTTTTGGGCAATCAAGCCTGTTTTTGAAGGTTTCCATCAAAGTTTTGGAGATTTTACTTACAAGGACTTCATGCATGCATGCACACTAGTTGGTTCTCGAGCATGGGGAAGCACAAATGGTTTAGCTCTGATTCCATTTGCAGATTTCTTAAACCACGATGGAGTTTCAGAAGCAATTATAATGAACGATGATGACAAACAATACTCAGAAATTATTGCTGATCATGACTATGCCCCTGGTGAACAGGTACTAATAAGATATGGAAAGTTTTCAAATGCTACATTAATGCTGGACTTTGGTTTTACAATTCCATACAACATTTACGATCAGGTTCAGATCCAGTTTGATATTCCTAAGCATGATCCTCTGCATGACATGAAGTTGGAACTCTTTCATCAGTACTTTGTACCTCCACCTGAAGATATGAAGGGCTTGTCACATCCCGTGAATTCCTTCAGTATCAAGGAGGTGAAGTCTGATAGAGGAAAGGGGAAGGGTCTTCCACAATCACTTCGTGCACTTGCTCGTGTTCTTACTTGTACCACATCTCAGGAACTTGACGATTTGGTCGTGGAAGCTGCTCAATATGATGGTAGGCTGGCTAGGCGCCCTTTACAGGATATCAGCAAAGAGATACAAGCACACATGATGTTGTTGCCATTATTCATCCAATTAATTGAGGAGCGCAATGCCACTATTATGTCACTGGATTCTTCCTATTCTCCCTCCTTGTGTGAAAGACTATCTGTTAGAAGGCTAATGGCTCAAGATCTCCTACATGGTGAGCTTCGCATTCTCAAATCTGCTTCTGCCTGGCTGGAGAACTACTGTTTTTCCTTGACTTGA 1395 0.4129 MPFRARTATESLWWSLHTVFNTHHPHCLPIHRNFYSLALSKPQFSSNCDEFLPWLERKAGSRISSSLFIANSSYGRSLFASKTIQTGDCILKIPYRVQITADNLLPEIRSLIGEEVGNIAKLAIFILIEKKLGQGSEWYPYINCLPQEELHNTVFWTESELEMICPSSVYQETIDQKSQIEKDFWAIKPVFEGFHQSFGDFTYKDFMHACTLVGSRAWGSTNGLALIPFADFLNHDGVSEAIIMNDDDKQYSEIIADHDYAPGEQVLIRYGKFSNATLMLDFGFTIPYNIYDQVQIQFDIPKHDPLHDMKLELFHQYFVPPPEDMKGLSHPVNSFSIKEVKSDRGKGKGLPQSLRALARVLTCTTSQELDDLVVEAAQYDGRLARRPLQDISKEIQAHMMLLPLFIQLIEERNATIMSLDSSYSPSLCERLSVRRLMAQDLLHGELRILKSASAWLENYCFSLT 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00088 464 Gene3D set domain protein methyltransferase, domain 1 44 284 - -
Pumo3g00088 464 Pfam SET domain 75 271 IPR001214 GO:0005515
Pumo3g00088 464 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 44 284 - -
Pumo3g00088 464 Gene3D - 287 459 IPR036464 -
Pumo3g00088 464 SUPERFAMILY SET domain 45 289 IPR046341 -
Pumo3g00088 464 FunFam Predicted protein 287 462 - -
Pumo3g00088 464 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 47 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00088 Pumo-Chr3 1164098 1172614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00088 51 264 NAC Transcription Factor Family AT3G56570 22.768 3.52e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pumo3g00088 SET 5.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00088 K19199 - gmx:100818002 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00088 3 1164098 1172614 Pumo3g00088 3 1164098 1172614 ECH