Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00071 ATGCCAGAGCTTCGTAGCGGAGTGCGACGTGGCCGTGGCCGTGGACAGAAAGCATCGGAACCGGCTAAGAAGGAGGTGAAGGCTCGTCCGGCGCCGAGAGGGAGACCCAGGACTAGATTGGCGGCGAGGGAATTGGAGCGCCAGGAGCCGTTGATCCCGATACCTATACCGGAACCGTTGATACCGATACCGATACCGATACCGGAGCCTGCGAAGGAAGAGAAAAAGGAAGAGGGTGTCGGCGTCAATAATATGGGTGACGAAAGTGGTGGCTTGAGTGGTAATAAGCCTGAGGAGGATGCCATCACTCCACCTTTTCCAGATAGGGTTCAAGTGGGAGGATCGCCCATGTACAAGGTAGAGAGAAAACTGGGTAAAGGTGGATTTGGTCAGGTTTTCGTTGGCCGTCGTGAGCGGGCGACAGGCGCTGGAGCTATGGAGGTGGCTCTGAAATTTGAACATAGAAACAGCAAGGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTATACAACACCCTCGGGGGTAGTTATGGAATACCAAAAGTACACTATAAAGGAAGACAAGGAGAATATTATGTGATGGTTATGGACATACTTGGTCCAAGTTTGTGGGATCTCTGGAATTCCTCAAGCCAGATGATGTCTGCTGAAATGGTCTCATGTATAGCGGTTGAGTCCTTATCAATACTTGAGAAGATGCACTCAAAAGGTTATGTGCATGGAGATGTAAAACCAGAGAACTTTTTACTTGGTCAGCCAGCTACAGCGCAAGAGAAGAAACTGTTTCTTGTTGACCTTGGATTAGCAACAAAATGGAGAGACACCTCCAGTGGACAGCATGTTGACTATGATCAACGTCCTGATATGTTTAGAGGAACTGTTCGATATGCTAGTGTTCATGCTCATTTGGGGAGAACTGCTAGTAGAAGGGATGATCTTGAATCCCTTGCATACACTCTAGTCTTCCTTCATAAGGGCCGATTACCATGGCAAGGTTATCAGGGTGATAGCAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGGACATCTCCTGAGACGCTGTGCTGCATGTGCCCTCCCCCTTTTAGGCAATTTCTTGAGATAGTAGTGAATATGAAATTTGATGAAGAACCTAATTATTCCAAGCTAATATCTTTGTTTGATGGTACAATTGGACCCAATCCAGCATTGCGGCCAATTAGTACTGAAGGTGCCCAAAAGGTTGGGCAAAAGCGGGGTAGATTGAATATTGAAGATGATGACTCTCAGCCAAGAAAGAAGGTCCGTTTAGGGGTTCCTGCTACACAATGGATTTCAATTTACAATGCAAGACTGCCAATGAAGCAAAGGTATCATTACAATGTGTCTGATGCAAGATTAGAACAGCATGTCGAGAGAGGGATTGCAGATGGCCTTCTTATTAGTTGTGTGTCTTCTTGTTGCAATCTTTGGGCCCTTATTATGGATGCTGGAACTGGTTTTACAGCTCAAGTTTACAAGTTGTCAACTTTTTTCTTGCATAAGGAATGGATCATGGAGCAGTGGGATAAAAACTTTTACATTACTTCCATTGCAGGGTCCAATAATGGCAGCTCTCTTGTGGTGATGTCAAAAGGTACGCAGTATACTCAACAATCCTACAAAGTGAGTGAATCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTCACCTCAATGGCTACTGCTGGAAGTCGCTGGGGTGTTGTTATGTCTCGGAATGCTGGATTCAGTAAACAGGTGGTCGAACTTGATTTTCTCTATCCAAGTGAGGGCATCCATAAGCGTTGGGATAAAGGTTATAGGATTACAGCAACTGCAGCTACAATGGATCAATCTGCTCTTATATTAAGTATTCCGAGGCGCAAGCTCAGTGATGAAACTCAGGAAACTCTACGTACATCGCAATTTCCCAGCACGCATGTTAAGGACAAATGGTCAAAAAACCTTTACCTTGCCTGTTTGTGCTACGGACGCACAGTATGCTGA 2025 0.4558 MPELRSGVRRGRGRGQKASEPAKKEVKARPAPRGRPRTRLAARELERQEPLIPIPIPEPLIPIPIPIPEPAKEEKKEEGVGVNNMGDESGGLSGNKPEEDAITPPFPDRVQVGGSPMYKVERKLGKGGFGQVFVGRRERATGAGAMEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSYGIPKVHYKGRQGEYYVMVMDILGPSLWDLWNSSSQMMSAEMVSCIAVESLSILEKMHSKGYVHGDVKPENFLLGQPATAQEKKLFLVDLGLATKWRDTSSGQHVDYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLVFLHKGRLPWQGYQGDSKSFLVCKKKMGTSPETLCCMCPPPFRQFLEIVVNMKFDEEPNYSKLISLFDGTIGPNPALRPISTEGAQKVGQKRGRLNIEDDDSQPRKKVRLGVPATQWISIYNARLPMKQRYHYNVSDARLEQHVERGIADGLLISCVSSCCNLWALIMDAGTGFTAQVYKLSTFFLHKEWIMEQWDKNFYITSIAGSNNGSSLVVMSKGTQYTQQSYKVSESFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSKQVVELDFLYPSEGIHKRWDKGYRITATAATMDQSALILSIPRRKLSDETQETLRTSQFPSTHVKDKWSKNLYLACLCYGRTVC 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00071 674 SMART serkin_6 118 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00071 674 MobiDBLite consensus disorder prediction 71 113 - -
Pumo3g00071 674 CDD STKc_CK1 117 388 - -
Pumo3g00071 674 Gene3D Transferase(Phosphotransferase) domain 1 103 428 - -
Pumo3g00071 674 MobiDBLite consensus disorder prediction 1 57 - -
Pumo3g00071 674 ProSiteProfiles Protein kinase domain profile. 118 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00071 674 PANTHER CASEIN KINASE-RELATED 116 638 - -
Pumo3g00071 674 ProSitePatterns Protein kinases ATP-binding region signature. 124 151 IPR017441 GO:0005524
Pumo3g00071 674 MobiDBLite consensus disorder prediction 1 46 - -
Pumo3g00071 674 SUPERFAMILY Protein kinase-like (PK-like) 118 395 IPR011009 -
Pumo3g00071 674 FunFam casein kinase 1-like protein HD16 92 430 - -
Pumo3g00071 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Pumo3g00071 674 Pfam Protein kinase domain 118 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00071 Pumo-Chr3 1026691 1032045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00071 88 346 AGC Kinase Gene Family AT3G08730 22.814 2.16e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Pumo3g00071 Pkinase 2.4e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00071 - - gmx:100783819 1269.22