Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00047 ATGAAACTAAAACTTCATTGCAACTTAGCACAAAGTATAGAAATAGAACCATTTCTTCAACATATCAAGCAAATTAAGATGAGTGTTACTGTTGTTATTTGTGTTACTGTTATCCTTCTCCCCTTGCTGCAGATGCCATATGTCTCAGCGAATAATGTTAGCATTGGTGAGACACTTGTTGCAGGGAACGGGGGTAAGCAATGGCTTTCTCAATCACAGGAGTTCGCATTTGGATTTCATCAGCTTGAGAATGAGAATGACCTTTACTTGCTTGCCATATGGTACCAAAATATACCTCAGGACTCTTTCATCTGGTATGCAAATGGAGACAACCCTGCTCCTAAAGGATCAAAACTGGAGCTAAATGAATACAGTGGACTAGTGTTGAAAAGCCCTCAAGGTGTTGAGCTATGGACATCACAGCCTCTATCAGGTACAATTTCCTATGGACTAATGAATGACACAGGCAACTTCCAGCTTCTGGATGACAATTCACAGGTCTTGTGGGACAGTTTCAGTAATCCAACTGATACCTTGGTGCCAACTCAAATCATGGAGGTGAAAGGCACACTTTCATCTCGCCAGAAAGAGGCCAACTTCTCAAAAGGAAGGTTCCAATTTCGCTTGCTTCCGGATGGTAATGCTGTGCTTAATCCTATAAATTTGCCTACCAACTATACTTATGACGCTCACTACATCAGTGGCACTTATGATCCGGCCAATACAACCAACTCTGGTTTCCAAGTGGTTTTTGATAATTCAGGCTTGTACATATTGAAGAGGAGCGGTGAGAAGGTTTATATTACAAATCCAAAAGATGTGCTCTCAACTGATTCCTATTATTACAGAGCAACCATCAATTTTGATGGAACTTTCACCATATCAAATTACCCGAAAAATCCAGCTTCTGATCCAAGCTGGACAGTTATGAAGACATTGCCAGATAACATTTGCATAGATTTGCGAGGAAAGACGGGTGGCAGTGGGGTCTGTGGATTCAATAGTATCTGCACTCTCGAAGCTGATCAAAGACCAAAGTGCAGTTGCCCAGAAGGTTATTCTCCTCTTGATTCAACTGATGAGTATGGCAGCTGCAAACCAAATTTGGAACTCGGTTGTGGAGGAAGTGGACAAAGCTCGCAAGGAGATCTGTACTTCATGAAGGAAATGGCAAATACTGATTGGCCTGAATCAGATTATGAATTGTATAAACCTTACAATTCAGAAGACTGCAAGACTTCTTGCTTGCAAGACTGCTTATGCGCTGTTTCTATTTTTAGAGATGATAGCTGCTGGAAGAAGAAGCTGCCTCTCTCAAATGGAAGAAAGGATAGAGCAGTAGAGGGATCTGCTTTCATTAAGTTGATGAAAAATGGTGTTTCATCAAGCCCTTCAAATCCATTCATTGAAGAGAAGAAATATAAAAAAGATCAAGATACTTTGATAACTGTGATTTCAGTCCTTTTGGGAGGTTCTGTCTTTTTCAATCTCATGCTGGCCAGCGCAGTATGGATTGGTTTCTACTTCTACTACAACAAAAAAAGTTCCACCAATAAAATTGTTGCAGAGAGCAATCTGCGCAGTTTCACCTTTCGAGAGCTTTTGCAAGCAACGGATAACTTCAAAGAGGAATTGGGAAGGGGGTCTTGTGGCATTGTCTATAAAGGAACAACAAATTTGGCTACTATTGCAGTAAAGAAACTAGACAAGGTGCTCAAAGACAGCGATAAGGAATTCAAAACAGAAGTGAATGTGATAGGCCAAACTCATCACAAAAGCTTGGTTCGCCTGCTTGGATATTGTGATGAGGGAGAACACCGGATTCTGGTGTATGAGTTCTTGAGCAATGGAACTTTAGCAAACTTCCTCTTTGGAGATTTCAAACCAAATTGGAACCAAAGAGTCCAGATTGCCTTTGGGATTGCAAGAGGGTTGGTTTACTTGCATGAGGAATGCTGCACCCAGATCATCCATTGTGACATAAAGCCACAAAATATACTTCTTGATGAGCAATACAGTGCAAGAATATCAGATTTTGGGTTGTCAAAGCTACTAATGATTAATCAAAGCCGCACAGAAACTGGCATTCGAGGAACAAAAGGGTATGTTGCGCCAGACTGGTTTAGGAGTGCACCAATCACTGCCAAAGTTGATGTCTACAGTTTTGGTGTGCTGCTTCTGGAGATCGTTTGCTGCAGGAGAAATGTAGATGGTGGTGAGGTTGGCAATGAAGAGAAGGCCATTTTAACTGATTGGGCTTATGACTGCTATAGGGCTGGAAGAATTGACATCCTGGTTGAAAATGATGATGAAGCCATCAATGATATAAATAGGCTCGAAAGGTTTGTGATGGTAGCTATTTGGTGCCTTCAAGAGGATCCGTCTCTAAGACCAACAATGAAGAAGGTGATGCTGATGCTGGAAGGAATAGCTCCAGTCACAATTCCACCAAGTCCCTTCCCTTATACCTCTGTGTCTGTTAGTTGCGGTTGA 2493 0.4156 MKLKLHCNLAQSIEIEPFLQHIKQIKMSVTVVICVTVILLPLLQMPYVSANNVSIGETLVAGNGGKQWLSQSQEFAFGFHQLENENDLYLLAIWYQNIPQDSFIWYANGDNPAPKGSKLELNEYSGLVLKSPQGVELWTSQPLSGTISYGLMNDTGNFQLLDDNSQVLWDSFSNPTDTLVPTQIMEVKGTLSSRQKEANFSKGRFQFRLLPDGNAVLNPINLPTNYTYDAHYISGTYDPANTTNSGFQVVFDNSGLYILKRSGEKVYITNPKDVLSTDSYYYRATINFDGTFTISNYPKNPASDPSWTVMKTLPDNICIDLRGKTGGSGVCGFNSICTLEADQRPKCSCPEGYSPLDSTDEYGSCKPNLELGCGGSGQSSQGDLYFMKEMANTDWPESDYELYKPYNSEDCKTSCLQDCLCAVSIFRDDSCWKKKLPLSNGRKDRAVEGSAFIKLMKNGVSSSPSNPFIEEKKYKKDQDTLITVISVLLGGSVFFNLMLASAVWIGFYFYYNKKSSTNKIVAESNLRSFTFRELLQATDNFKEELGRGSCGIVYKGTTNLATIAVKKLDKVLKDSDKEFKTEVNVIGQTHHKSLVRLLGYCDEGEHRILVYEFLSNGTLANFLFGDFKPNWNQRVQIAFGIARGLVYLHEECCTQIIHCDIKPQNILLDEQYSARISDFGLSKLLMINQSRTETGIRGTKGYVAPDWFRSAPITAKVDVYSFGVLLLEIVCCRRNVDGGEVGNEEKAILTDWAYDCYRAGRIDILVENDDEAINDINRLERFVMVAIWCLQEDPSLRPTMKKVMLMLEGIAPVTIPPSPFPYTSVSVSCG 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00047 830 FunFam Serine/threonine-protein kinase 176 321 - -
Pumo3g00047 830 CDD B_lectin 51 175 IPR001480 -
Pumo3g00047 830 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 59 819 - -
Pumo3g00047 830 SUPERFAMILY Protein kinase-like (PK-like) 518 808 IPR011009 -
Pumo3g00047 830 FunFam S-receptor-like serine/threonine-protein kinase 510 613 - -
Pumo3g00047 830 PIRSF SRK 22 829 IPR024171 GO:0004674
Pumo3g00047 830 Gene3D - 49 174 IPR036426 -
Pumo3g00047 830 ProSiteProfiles Protein kinase domain profile. 539 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00047 830 ProSiteProfiles Bulb-type lectin domain profile. 44 173 IPR001480 -
Pumo3g00047 830 Pfam Protein kinase domain 542 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00047 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 656 668 IPR008271 GO:0004672|GO:0006468
Pumo3g00047 830 Gene3D Phosphorylase Kinase; domain 1 507 613 - -
Pumo3g00047 830 SMART serkin_6 539 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00047 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 614 814 - -
Pumo3g00047 830 Gene3D - 176 317 - -
Pumo3g00047 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 48 173 - -
Pumo3g00047 830 Gene3D Transferase(Phosphotransferase) domain 1 614 811 - -
Pumo3g00047 830 SUPERFAMILY alpha-D-mannose-specific plant lectins 89 218 IPR036426 -
Pumo3g00047 830 Pfam D-mannose binding lectin 103 188 IPR001480 -
Pumo3g00047 830 SMART blect_4 50 175 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00047 Pumo-Chr3 697050 700481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00047 521 809 Receptor kinase-like Gene Family AT1G60800 42.424 5.80e-69 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Pumo3g00047 Pkinase 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00047 - - gmx:100811299 1486.86