Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00040 ATGATTTCAAACTCTATGATAAACATAAACAAGGAAAGTTCAAATTGTAGCGAAATCAATTTTGCACTGGAAGGAATTAAACGCGGGAGGCATGAAGAGAATAATGCATCAGGGTCGTTTCAGAAGTTCAAAGGTGTTGTGCCTCAACAAAATGGGAACTGGGGTGCACAAATATATGCAAACCACCAAAGAATCTGGTTGGGGACCTTCAAATCTGAAAGAGAGGCTGCAATGGCTTATGACAGCGCCAGCATAAAACTTAGAAGCGGAGAGAGCCACAGAAACTTTCCATGGAACGATCAAACAGTTCAAGAGCCTCAGTTTCAAAGCCATTATAGCGTAGAAACAGTGCTGAGCATGATTAGAGATGGCACTTACCCATCAAACTTTGCTACATTTCTCAGCACTCGTCAAACCCAACAAGGCGTTGCCAAACAAATAAGTTTGAAGGGTGAGGAGCAGTTTTGTTGCACCCAACTTTTTCAAAAGGAATTAACACCAAGTGATGTAGGCAAGCTCAACCGACTTGTCATCCCAAAGAAACACGCAGTTACCTATTTTCCTTACGTTTGTGGCAATGCAGGAGCGAATGATGAGAGTGTTGACGTGGAGGTTGTGTTTTATGACAAACTCATGCGGTTGTGGAAATTTCGATACTGCTATTGGAAGAGCAGCCAAAGTTACGTGTTCACCAGAGGGTGGAATCGGTTTGTGAAGGACAAGAAATTAATGGCCAAAGATGTCATTGCCTTTTTTATGTGTGAACCTACGGATTGGAGAAAAAGGGGGGAGGGGGAAGCTTTTGCATTGATTGATGTAATTTATAATGCAGATGACAGAAGGCAGTGTTTTGGAGACAGCAAGGGAGATACTAAACAAGTTTTGGGAAACGAGTTAGCTTGTAGTACTGAAGAAGATGAAGATGAAGAGACCAAGGATGGAAACAATGGAAATGATTTGAACGCACAGAAGGGTTTGAGGATCTTTGGTGTATGTATCACCTGA 1005 0.4209 MISNSMININKESSNCSEINFALEGIKRGRHEENNASGSFQKFKGVVPQQNGNWGAQIYANHQRIWLGTFKSEREAAMAYDSASIKLRSGESHRNFPWNDQTVQEPQFQSHYSVETVLSMIRDGTYPSNFATFLSTRQTQQGVAKQISLKGEEQFCCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPYVCGNAGANDESVDVEVVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLMAKDVIAFFMCEPTDWRKRGEGEAFALIDVIYNADDRRQCFGDSKGDTKQVLGNELACSTEEDEDEETKDGNNGNDLNAQKGLRIFGVCIT 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00040 334 CDD B3_DNA 160 253 IPR003340 GO:0003677
Pumo3g00040 334 SUPERFAMILY DNA-binding pseudobarrel domain 159 258 IPR015300 -
Pumo3g00040 334 SMART B3_2 161 262 IPR003340 GO:0003677
Pumo3g00040 334 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 41 331 IPR044800 GO:0003700
Pumo3g00040 334 Pfam B3 DNA binding domain 161 252 IPR003340 GO:0003677
Pumo3g00040 334 CDD AP2 41 99 IPR001471 GO:0003700|GO:0006355
Pumo3g00040 334 SMART rav1_2 42 103 IPR001471 GO:0003700|GO:0006355
Pumo3g00040 334 FunFam AP2 domain-containing protein RAP2.8 41 98 - -
Pumo3g00040 334 ProSiteProfiles B3 DNA-binding domain profile. 161 277 IPR003340 GO:0003677
Pumo3g00040 334 Pfam AP2 domain 42 88 IPR001471 GO:0003700|GO:0006355
Pumo3g00040 334 Gene3D AP2/ERF domain 41 98 IPR036955 GO:0003700|GO:0006355
Pumo3g00040 334 ProSiteProfiles AP2/ERF domain profile. 42 97 IPR001471 GO:0003700|GO:0006355
Pumo3g00040 334 Gene3D - 157 268 IPR015300 -
Pumo3g00040 334 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00040 Pumo-Chr3 649385 650389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00040 36 333 RAV Transcription Factor Family AT1G50680 51.045 7.43e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Pumo3g00040 B3 6.7e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00040 K09287 - gmx:102660503 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00040 3 649385 650389 Pumo3g00040 3 649385 650389 ECH