Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00033 ATGTATCCCTCTTCGTCTTCGTCATCCTCGTCTTCTTCTCAGTCCATGAGCCAAGCCCAAGCCCAAGCGGGGGCCGGGCTCACACGCTACGGCTCCGCCCCGGGGTCTCTGCTGACCAGCACGGTGGATGCGGTCATAGGGGGATCGCGTCCCAGTCCCAGCCCCTACTATTCCGGAGAGTCTTCCGAGTCAACGTGCAAAGAGCAAAGATCTTACGACAACCAGGCCTTCGGATCCGCCTTGCTGCGTCAGAAAAGCTCTCCCGCCGGCTTCCTCTCCCATCTAGCCGCCACCGCCACCACCACCACCACCACCAATCACAATCACAATGGAGGATTCACAATCACGCGGGGCGGTGGTGTATCAATATCAAATTGTTCTCGGTTGAAGTCTCAATTGAGCTTCACGGGTCACGCCGAAAATAGTAACAATGTGAATGTGAATGTGGTTGGTGGAATGGATGGCTGGGACAATACCATCGCCTTTTCTGCTAAGCCCTCCAAAATCAGCAACGATCATCCCGACAATATTCTACATTGCCTCAATGCCTTGGAATCTCAGTTTAGTCTGCCACAAACAAGTCTGGAGATGGCAACTGTGGAGAAGCTATTGCACATTCCTGAAGATTCCGTCCCTTGTAAAATCCGTGCTAAGCGAGGTTGTGCTACTCATCCCCGTAGCATTGCCGAGCGGGAGAGAAGAACACGAATAAGTGGCAAACTCAAAAAGTTACAGGACCTTGTACCTAATATGGATAAGCAAACAAGCTATGCCGACATGCTGGATTTGGCCGTTCAACATATTAAAGGTCTTCAAACTCAGGTTCAGAAGCTTCACAAAGAACTTGAGAATTGCACTTGCGGATGCAAACAAAGCAAATAA 882 0.5068 MYPSSSSSSSSSSQSMSQAQAQAGAGLTRYGSAPGSLLTSTVDAVIGGSRPSPSPYYSGESSESTCKEQRSYDNQAFGSALLRQKSSPAGFLSHLAATATTTTTTNHNHNGGFTITRGGGVSISNCSRLKSQLSFTGHAENSNNVNVNVVGGMDGWDNTIAFSAKPSKISNDHPDNILHCLNALESQFSLPQTSLEMATVEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQTQVQKLHKELENCTCGCKQSK 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00033 293 FunFam Transcription factor bHLH130 family 222 291 - -
Pumo3g00033 293 SMART finulus 227 277 IPR011598 GO:0046983
Pumo3g00033 293 CDD bHLH_AtbHLH_like 226 278 IPR045239 -
Pumo3g00033 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 221 271 IPR011598 GO:0046983
Pumo3g00033 293 MobiDBLite consensus disorder prediction 1 32 - -
Pumo3g00033 293 MobiDBLite consensus disorder prediction 44 70 - -
Pumo3g00033 293 Pfam Helix-loop-helix DNA-binding domain 226 272 IPR011598 GO:0046983
Pumo3g00033 293 MobiDBLite consensus disorder prediction 54 70 - -
Pumo3g00033 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 224 286 IPR036638 GO:0046983
Pumo3g00033 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 283 - -
Pumo3g00033 293 MobiDBLite consensus disorder prediction 1 25 - -
Pumo3g00033 293 Gene3D - 222 292 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00033 Pumo-Chr3 531316 534282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00033 23 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 42.697 2.98e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g00033 HLH 4.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00033 - - vra:106771988 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g00033 3 531316 534282 Pumo3g00033 3 531316 534282 ECH
Pumo5g02623 5 72245587 72249297 Pumo3g00033 3 531316 534282 ECH
Pumo3g02861 3 49816420 49820709 Pumo3g00033 3 531316 534282 ECH