Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00020 ATGACCATGGCGGCTGCATTTACAACTACAACTGCAACACTGAGACTGTCAAATGTTGGAGAAAGCAAAGGATTGCACCTCCGTAACCCTAATCTTAAGGTTATGCGGGGGTTTGGCGGTTGTTCTGGATTGGCAGTGAGTGCGACAACGGGAAGGGGAAGGGTTGGGGCGAGGAGGAGTTTGAGGGTTCGGGCGAGTTCGGAAGAGGAGACAGGTCTGCAGTCAAAAGTGACTCAGAAAGTATACTTTGACATAAGCATTGGAAATCCAGTTGGGAAGCTTGCGGGACGGATTGTGATTGGACTGTACGGAGATGATGTCCCCCAAACAGCTGAGAACTTCCGTGCCCTTTGTGCTGGAGAGAAGGGCTTTGGCTATAAGGGCTCTACCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAAAATTTTAATTTGTCTCACACTGGACCGGGAGTTGTTAGCATGGCAAATGCAGGTCCCAACACAAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACACCATGGCTGGATCAGAGGCATGTAGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATCGAATCGCAGGAGACAGATAGGGGTGACCGTCCTAGAAAGAAGGTGACCATCAGTGACTGTGGTGAGCTTCCAATTGCATGA 741 0.4764 MTMAAAFTTTTATLRLSNVGESKGLHLRNPNLKVMRGFGGCSGLAVSATTGRGRVGARRSLRVRASSEEETGLQSKVTQKVYFDISIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCAGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPRKKVTISDCGELPIA 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00020 246 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 126 143 IPR020892 GO:0003755|GO:0006457
Pumo3g00020 246 Gene3D - 65 245 IPR029000 -
Pumo3g00020 246 FunFam Peptidyl-prolyl cis-trans isomerase 66 246 - -
Pumo3g00020 246 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 93 241 IPR002130 GO:0000413|GO:0003755
Pumo3g00020 246 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 202 217 IPR002130 GO:0000413|GO:0003755
Pumo3g00020 246 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 174 189 IPR002130 GO:0000413|GO:0003755
Pumo3g00020 246 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 102 117 IPR002130 GO:0000413|GO:0003755
Pumo3g00020 246 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 143 IPR002130 GO:0000413|GO:0003755
Pumo3g00020 246 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 189 201 IPR002130 GO:0000413|GO:0003755
Pumo3g00020 246 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 92 242 IPR002130 GO:0000413|GO:0003755
Pumo3g00020 246 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 80 243 - -
Pumo3g00020 246 SUPERFAMILY Cyclophilin-like 76 243 IPR029000 -
Pumo3g00020 246 CDD cyclophilin_ABH_like 80 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00020 Pumo-Chr3 388802 392169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00020 96 237 U-box Gene Family AT5G67530 48.252 1.24e-34 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00020 K03768 - gmx:100796688 413.305