Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00016 ATGGGTTGTTTTTCGTGTTTCGATTCGAGGGAGGACGAGAAGCTGAATCCCAATCCTCAGCAGGAAAACCATCACCATGAACATGAACATGAACATGATGATGGTCTGAAGCCCCCTGTCCCCTCTCGTATTTCCAGATTGCCCTCTGCCTCTGCAGGAGGAGCAGACAAGCTACGCTCAACAAGTAATGGTAATGGTAATAATGGAGACTCCAAAAGGGAATTGGCTGCTCTCAAGGATGGACCCGCTGTTCAAATTGCCGCTCAAACTTTCACTTTCCGTGAGCTTGCAGCCGCAACCAAAAACTTCAGGCCCCAATCCTTTTTGGGGGAAGGTGGTTTCGGAAGGGTCTACAAGGGCCGCCTCGAAACCACCGGTCAGGTTGTGGCTGTTAAACAGTTAGACAGAAACGGTCTTCAGGGTAATCGGGAATTCCTTGTGGAGGTTCTCATGCTCAGTCTTCTACACCACCCTAATCTTGTGAATCTCATTGGATACTGTGCAGATGGGGACCAACGCCTCTTAGTTTATGAATTTATGCCATTGGGATCGTTGGAAGACCACCTTCATGATCTTCCCCCGGATAAGGAACCATTAGATTGGAACACCAGGATGAAAATAGCTGCTGGGGCAGCAAAAGGATTGGAATATCTTCACGACAAAGCAAATCCTCCTGTCATTTATAGAGACTTCAAATCATCTAATATATTACTTGATGAAGGTTATCATCCAAAGCTTTCAGACTTTGGTCTCGCAAAGCTTGGTCCAGTTGGCGATAAATCACACGTTTCCACCCGTGTCATGGGAACTTATGGTTACTGTGCCCCAGAATATGCTATGACTGGACAGCTGACTGTGAAGTCTGATGTATATAGTTTTGGGGTAGTTTTCTTGGAGCTGATTACTGGCCGTAAAGCCATTGATAGCACCCGACCCCATGGAGAACAAAACCTTGTCACATGGGCACGTCCACTGTTCAATGACCGCAGGAAGTTTCCAAAGTTAGCGGATCCACAGCTGCAGGGACGGTATCCCATGCGGGGTCTTTACCAAGCTCTAGCTGTGGCATCAATGTGCATTCAAGAACAGGCTGCAGCACGTCCTCTCATTGGGGATGTGGTGACAGCCCTTTCTTTTCTAGCCAACCAGGCATATGACCATAGGGGAGCTGGTGATGATAAAAGGAACAGAGATGATAAAGGTGGAAGAATATTGAAACATGATGAAGGTGGAGGATCTGGACGCAGATGGGATTTGGAAGGATCTGAGAAAGATGAATCCCCACGAGAAACTGCTAGGATGTTAAACAACAGGGATCTTGATAGAGAACGTGCCGTGGCTGAAGCCAAGATGTGGGGAGAGAACTGGAGAGAAAAGAGACGACAAAGTGCGCAGGGCAGTTTTGATGGTTCTAACGCCATTGTACAATTCCCATAA 1437 0.4732 MGCFSCFDSREDEKLNPNPQQENHHHEHEHEHDDGLKPPVPSRISRLPSASAGGADKLRSTSNGNGNNGDSKRELAALKDGPAVQIAAQTFTFRELAAATKNFRPQSFLGEGGFGRVYKGRLETTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTRPHGEQNLVTWARPLFNDRRKFPKLADPQLQGRYPMRGLYQALAVASMCIQEQAAARPLIGDVVTALSFLANQAYDHRGAGDDKRNRDDKGGRILKHDEGGGSGRRWDLEGSEKDESPRETARMLNNRDLDRERAVAEAKMWGENWREKRRQSAQGSFDGSNAIVQFP 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00016 478 MobiDBLite consensus disorder prediction 7 39 - -
Pumo3g00016 478 MobiDBLite consensus disorder prediction 1 73 - -
Pumo3g00016 478 MobiDBLite consensus disorder prediction 388 440 - -
Pumo3g00016 478 MobiDBLite consensus disorder prediction 55 70 - -
Pumo3g00016 478 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Pumo3g00016 478 FunFam Serine/threonine-protein kinase PBS1 76 179 - -
Pumo3g00016 478 Gene3D Transferase(Phosphotransferase) domain 1 180 400 - -
Pumo3g00016 478 PANTHER OS07G0668900 PROTEIN 3 388 - -
Pumo3g00016 478 FunFam Serine/threonine-protein kinase PBS1 180 395 - -
Pumo3g00016 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Pumo3g00016 478 MobiDBLite consensus disorder prediction 453 478 - -
Pumo3g00016 478 Pfam Protein kinase domain 106 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00016 478 SUPERFAMILY Protein kinase-like (PK-like) 85 379 IPR011009 -
Pumo3g00016 478 ProSiteProfiles Protein kinase domain profile. 103 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g00016 478 Gene3D Phosphorylase Kinase; domain 1 87 179 - -
Pumo3g00016 478 CDD STKc_IRAK 109 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00016 Pumo-Chr3 361736 370534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00016 1 461 Glycoside Hydrolase AT3G07070 56.803 4.49e-172 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Pumo3g00016 Pkinase 3.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00016 K13430 - gmx:100777987 839.336