Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo3g00012 | ATGCAAGAGTACAAACGGCAGATTGATCAAGAGAGTAGGTGGTCTTCAAATGGTTCTCCTAATGGAGATGGTATACAAACCATTGGTAGAAGTTCACATAAAATGATAGAGGCAGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACTATTCGACAAGGTTATCTCTCAAAGCGTTCTTCAAACTTACGGGGGGACTGGAAAAGGAGGTTCTTTGTTCTTGATAGCCGGGGATTGCTGTATTACTATCGTAAACAGTGCAGCAAATCTTCTGGGTCTAGCAGTCAACATTCTGGACAGAGGAATAGTTCTGAGTTTGGTTCTGGACTTTTAAGTCGATGGCTGTCTTCTCATTATCATGGTGGTGTACATGATGAGAAATCTGTAGCCCATCACACTGTGAACCTGCTTACATCAACAATCAAAGTTGATGCCAACCAATCAGATTTGAGGTTTTGTTTCAGGATCATTTCACCAACCAAGAACTACACTTTGCAGGCAGAGAGTGCTCCGGACCAAATGGATTGGATTGAAAAGATAACAGGTGTTATTGCCTCATTGTTGAGTTCTCAGATTCCTGAAAGGTGTTTGCCTGCAAGTCCAATGGGAAGTGGTTATCATAGGTCTGCCAGTGAGAGTAGTTCTTTTGAAAGCTCAGATTTTGATCACTCTGCTGTTGAAGAATATACAGCAGAGAGAAGTCTTGCTTCTGTACATCTTGAGTGGCCCTCAAGGAATTTGCAGCTGCAGCAATACTGTACTAAAAGTGAGAAGCCAATTGATGTGTTACGAAGAGTTTGTGGGAACGATAAATGTGCTGATTGTGGTGCCCCTGAACCTGATTGGGCTTCACTAAATCTTGGTGTTCTTGTTTGTATTGAGTGTTCTGGTGTTCACCGAAACCTTGGTGTGCACATATCAAAGGTTAGGTCTCTTACACTGGATGTTAAAGTTTGGGAACCTTCTGTGATAAGTTTGTTTCAGTCTCTTGGGAATGCTTTTGCCAACACAGTCTGGGAGGAACTATTGGAATCAAGATGTTCCTTTCAGGTTGATCTTGTTCCCACAGGCTTGAACAAGTCTGACAAACCACAGATGCTTTTGATGAGCAAACCTTGTCAATCTGATTCTCTATCTATAAAGGAAAAATTCATCCATGCAAAGTATGCAGAGAAGCTTTTTGTTCACAAGCCTAAGGACAATCAATACCATTTCTTGGTGTCACAACGGATCTGGGAGGTTGTTCATACTAATGACAAAAAAGCTGTATACCACTACATTGTTAATTCTGACATTGACATCAATGCTGTTTATGAGCAAGCGTGCAGTAATTCTTTAACCCTTGGCAAAGTAATGTTACAAGAGCAGGCAAGCCAGGATCATGGTTCTACATTATCTGGGAATTCATTGGACTGGTCCTCTCCTACCTCTTTCAACTTGGTGGGTATTAAAGAAGGCCAGAAATTGGACAATCTAGTCGGGTACACCCTACTTCACCTGGCTTGTGAAACTGCAGATATTGGTATGCTGGAGCTGCTCCTTCAGTATGGTGCTAATGTTAATGCAGCTGATTTAAGATGTCAGACACCACTACATCACTGTATTCTCAAAGGCAGATCTGCATTTGCAAGATTACTTCTCTTAAGGGGAGCTGATCCAAGAGCTGTGGATGAGCTGGGAAGAACCCCTATTGAGCTTGCTGTACAGTCAAATTTTGACGACAGTGAGATCCTTACTCTGTTGTCTGATTCAAACGGATGA | 1761 | 0.4202 | MQEYKRQIDQESRWSSNGSPNGDGIQTIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGLLYYYRKQCSKSSGSSSQHSGQRNSSEFGSGLLSRWLSSHYHGGVHDEKSVAHHTVNLLTSTIKVDANQSDLRFCFRIISPTKNYTLQAESAPDQMDWIEKITGVIASLLSSQIPERCLPASPMGSGYHRSASESSSFESSDFDHSAVEEYTAERSLASVHLEWPSRNLQLQQYCTKSEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNAFANTVWEELLESRCSFQVDLVPTGLNKSDKPQMLLMSKPCQSDSLSIKEKFIHAKYAEKLFVHKPKDNQYHFLVSQRIWEVVHTNDKKAVYHYIVNSDIDINAVYEQACSNSLTLGKVMLQEQASQDHGSTLSGNSLDWSSPTSFNLVGIKEGQKLDNLVGYTLLHLACETADIGMLELLLQYGANVNAADLRCQTPLHHCILKGRSAFARLLLLRGADPRAVDELGRTPIELAVQSNFDDSEILTLLSDSNG | 586 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo3g00012 | 586 | SMART | arf_gap_3 | 257 | 402 | IPR001164 | GO:0005096 | |
| Pumo3g00012 | 586 | ProSiteProfiles | Ankyrin repeat region circular profile. | 526 | 558 | - | - | |
| Pumo3g00012 | 586 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 257 | 402 | IPR001164 | GO:0005096 | |
| Pumo3g00012 | 586 | ProSiteProfiles | Ankyrin repeat region circular profile. | 493 | 524 | - | - | |
| Pumo3g00012 | 586 | SMART | PH_update | 50 | 187 | IPR001849 | - | |
| Pumo3g00012 | 586 | ProSiteProfiles | Ankyrin repeat profile. | 526 | 558 | IPR002110 | GO:0005515 | |
| Pumo3g00012 | 586 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 257 | 397 | IPR037278 | - | |
| Pumo3g00012 | 586 | PRINTS | HIV Rev interacting protein signature | 311 | 332 | IPR001164 | GO:0005096 | |
| Pumo3g00012 | 586 | PRINTS | HIV Rev interacting protein signature | 269 | 288 | IPR001164 | GO:0005096 | |
| Pumo3g00012 | 586 | PRINTS | HIV Rev interacting protein signature | 288 | 305 | IPR001164 | GO:0005096 | |
| Pumo3g00012 | 586 | PANTHER | CENTAURIN/ARF | 1 | 584 | IPR045258 | GO:0005096 | |
| Pumo3g00012 | 586 | Pfam | PH domain | 51 | 184 | IPR001849 | - | |
| Pumo3g00012 | 586 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD1 | 239 | 403 | - | - | |
| Pumo3g00012 | 586 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Pumo3g00012 | 586 | Gene3D | - | 481 | 585 | IPR036770 | - | |
| Pumo3g00012 | 586 | ProSiteProfiles | Ankyrin repeat profile. | 493 | 525 | IPR002110 | GO:0005515 | |
| Pumo3g00012 | 586 | Gene3D | - | 42 | 195 | IPR011993 | - | |
| Pumo3g00012 | 586 | CDD | PH_ACAP | 52 | 189 | - | - | |
| Pumo3g00012 | 586 | ProSiteProfiles | PH domain profile. | 49 | 185 | IPR001849 | - | |
| Pumo3g00012 | 586 | SUPERFAMILY | PH domain-like | 50 | 189 | - | - | |
| Pumo3g00012 | 586 | MobiDBLite | consensus disorder prediction | 11 | 28 | - | - | |
| Pumo3g00012 | 586 | Gene3D | Arf GTPase activating protein | 240 | 404 | IPR038508 | - | |
| Pumo3g00012 | 586 | Pfam | Putative GTPase activating protein for Arf | 260 | 397 | IPR001164 | GO:0005096 | |
| Pumo3g00012 | 586 | SUPERFAMILY | Ankyrin repeat | 428 | 574 | IPR036770 | - | |
| Pumo3g00012 | 586 | CDD | ArfGap | 260 | 389 | - | - | |
| Pumo3g00012 | 586 | SMART | ANK_2a | 493 | 522 | IPR002110 | GO:0005515 | |
| Pumo3g00012 | 586 | SMART | ANK_2a | 526 | 555 | IPR002110 | GO:0005515 | |
| Pumo3g00012 | 586 | Pfam | Ankyrin repeats (many copies) | 495 | 547 | IPR002110 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo3g00012 | Pumo-Chr3 | 280397 | 303760 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo3g00012 | 247 | 400 | C2H2 Transcription Factor Family | AT3G07940 | 38.217 | 1.33e-20 | 90.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo3g00012 | K12489 | - | gmx:100798227 | 968.763 |