Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g00011 ATGGCTTTAGAGCAGGAATTATCGCTGGGTCAGAATACGAATAGGAACCCGAACCCAGTTGACGGAAACACAAACGGCGTGGATGGTCGGGGGGAGGGCGGAGATGAGGGAGGGAAAGCGCCGAGACTGCCTCGGTGGACAAGACAGGAAATTCTGGTTCTGATACAGGGAAAGAGAGACGCTGAGAACAAGTTCAGGAGGGGTCGCACTGCGGGATTGCCATTCGGGTCGGGTCAGGTGGAGCCCAAATGGGCATCGGTATCTTCCTACTGCAGAAAGCATGGAGTGAACAGAGGTCCGGTTCAGTGCCGGAAAAGGTGGAGCAATTTGGCCGGAGACTACAAGAAGATCAAGGAATGGGAGTCTCAGATAAGGGAGGAGACGGAGTCGTTTTGGGTCATGAGAAACGATTTAAGGAGAGAGAGGAAATTGCCCGGATTTTTCGATAAGGAGGTCTATGATATTCTTGATTCAGGCTCGCAGGCGCCGGCGCCGGCCTTGGCTCTCGCTCTTTCGTCGCCTCCACCAACCACAGTAACCAAAAGAGTCCCTGACGAAGCTGCTGCTGCTGAGCCTGACGAGGAGCCTCACCTCTATGATAGTAATCGGAGCGCGCCTGGTGAGGATGGCTTGTTCTCCGATTTTGAACAAGATGAAGTCGCTGCCAGTCCTGAGAAGAAGGACGTTTTGCCCCCCTCCAACAAGGACATTCCTGCTCCCATTCCTATCTCAGGTGTGACTAACGAGAAACAGTCTACTTCAAATCCAGAAATGGGTTCTACATCTCAAGGAGAGCGGAAAAGGAAGCGGTTAGCAACTGATGGAGAGGAGGAAACTTTGCAATATCAATTAATTGATGTCTTAGAAAGAAATGGCAAGATGCTAAGTGCTCAACTTGAAGCGCAGAATATAAATTTCCAGTTGGATCGTGAGCAGCGGAAAGACCATGCAAGTAATTTAGTTGCTGTGCTTGATAAGCTTGCAGATGCTCTAGGGAGAATTGCTGATAAATTATAG 1017 0.5015 MALEQELSLGQNTNRNPNPVDGNTNGVDGRGEGGDEGGKAPRLPRWTRQEILVLIQGKRDAENKFRRGRTAGLPFGSGQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIREETESFWVMRNDLRRERKLPGFFDKEVYDILDSGSQAPAPALALALSSPPPTTVTKRVPDEAAAAEPDEEPHLYDSNRSAPGEDGLFSDFEQDEVAASPEKKDVLPPSNKDIPAPIPISGVTNEKQSTSNPEMGSTSQGERKRKRLATDGEEETLQYQLIDVLERNGKMLSAQLEAQNINFQLDREQRKDHASNLVAVLDKLADALGRIADKL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g00011 338 MobiDBLite consensus disorder prediction 186 202 - -
Pumo3g00011 338 Gene3D - 46 116 - -
Pumo3g00011 338 MobiDBLite consensus disorder prediction 1 43 - -
Pumo3g00011 338 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 16 338 - -
Pumo3g00011 338 MobiDBLite consensus disorder prediction 1 23 - -
Pumo3g00011 338 MobiDBLite consensus disorder prediction 245 261 - -
Pumo3g00011 338 Pfam Myb/SANT-like DNA-binding domain 45 134 IPR044822 -
Pumo3g00011 338 ProSiteProfiles Myb-like domain profile. 45 111 IPR001005 -
Pumo3g00011 338 MobiDBLite consensus disorder prediction 166 275 - -
Pumo3g00011 338 CDD GT1 44 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g00011 Pumo-Chr3 260418 264232 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g00011 29 142 Trihelix Transcription Factor Family AT1G13450 31.897 1.65e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo3g00011 Myb_DNA-bind_4 9.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g00011 - - gmx:100779050 516.153