Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo345g00001 ATGGGGAAGAAGGGAAGTGGTAGTTCATGGTTAACCGCTGTCAAAAGGGCATTCAGATCTCCCACCAAAGACAGTGACAAAAGGAGTGGCAGAAGAAGAGAAGACTGTGATCAAGAAGAAGACGAAGAAAAGAAGAGGGAGAAGAGAAGATGGATTTTCAGGAAGACTCACATGAGTCATGAAGGAGTGAACAGCAACAACAACACTACTCAACAAAAGTTGAAGCATGAAGTGCCACCAAGTGGGGGTTCAAGGACAGACCAGGATCAAAAGCATGCACTTGCGGTGGCGGTGGCCACCGCAGAAGCCGCCATGGCCACCGCTCAGGCGGCGGTGGAGGTGGCAAGGTTGTCCAAACCTGCTAGCCATGCCAGGGAGCATTATGCTGCTGTTGTGATCCAAACTGCTTTCAGAGGGTATCTTGCTAGAAGAGCACTTCGTGCACTAAAGGGGTTGGTGAAGTTGCAAGCTTTGGTTAGGGGTCACAATGTGAGGAAGCAGGCAAAGATGACCCTTAGGTGCATGCAAGCTTTGGTTAGAGTTCAAGCAAGGGTGCTTGACCAACGCATAAGGTCTTCACTTGATGGTAGTAGAAAATCCACTTTCAGTGACACTGCTAGTGTTTGGGACTCGCGGTATCTTCAGGACATTTCAGATAGGAAATCAATATCAAGAGAGGGAAGCAGCATTGCAGATGACTGGGATGAACGTCCTCACACAGTTGAAGAAGTGAAGGCCATGTTGCAGCAGAGGAAGGAAGCTGCTGCAATGAAGAGGGACAAGACCTTATCCCAAGCCTTTTCCCAACAGATTTGGAGGAATGGTAGGACATCATCAATTGGAAATGAAGATGAGTTGGAAGAGAGACCAAAATGGCTAGATCGGTGGATGGCCACAAAGCCATGGGAGAATAGAGGAAGGGCTTCAACTGATCAAAGAGACCCCATTAAGACTGTGGAGATTGACACATCTCAGCCCTATTCATATCTAGGAACCAATTACAGAAGATCACATCCAAATTATCAATATAACCCAAACCATCACCAACCGCAAAGGCATTCCATTGCTTCCCCACTCCATAGATCTCACCAAAATGGATCCCTTCACCAATCCCCTGCCACCCCTTCTCCTGCCAAATCAAGGCCTATCCAAGTCCGGTCGGCCAGCCCGCGTTGCGTTAGAGAAGACAGAAGCTACCACACCTCCCAATCCCAAACACCAAGCTTGAGGTCTAATTACCACTACACAGGAAACTTGTACCAAAATGGAAGGGTTGTTGGAACTGGAACTAGTAGTGGTGGTGCTACATTGCCTAATTACATGGCAGCAACCGAGTCTGCGAAGGCTCGAATTCGGTCACAAAGTGCACCAAGGCAAAGGCCATCCACACCAGAGAGGGACAGGGTTGGATCAGCAAAGAAAAGGCTTTCTTTTCCTGCTCCTGATCCTTATAGTGTGGGAGTGATGAGTTATGGAAATTATGGACATAGTTTAAGGAGTCCAAGCTTCAAGAGTGTGAGTGGATCACACTTTGTGTTGGAGCAACAGTCCAACTACTCCTCTTGCTGCACTGAGAGTGTTGGTGGTGGTGAGGTTTCTCCTTCTTCAACTGGTGACCTTAGGAGGTGGTTGAGATGA 1638 0.4811 MGKKGSGSSWLTAVKRAFRSPTKDSDKRSGRRREDCDQEEDEEKKREKRRWIFRKTHMSHEGVNSNNNTTQQKLKHEVPPSGGSRTDQDQKHALAVAVATAEAAMATAQAAVEVARLSKPASHAREHYAAVVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSLDGSRKSTFSDTASVWDSRYLQDISDRKSISREGSSIADDWDERPHTVEEVKAMLQQRKEAAAMKRDKTLSQAFSQQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDPIKTVEIDTSQPYSYLGTNYRRSHPNYQYNPNHHQPQRHSIASPLHRSHQNGSLHQSPATPSPAKSRPIQVRSASPRCVREDRSYHTSQSQTPSLRSNYHYTGNLYQNGRVVGTGTSSGGATLPNYMAATESAKARIRSQSAPRQRPSTPERDRVGSAKKRLSFPAPDPYSVGVMSYGNYGHSLRSPSFKSVSGSHFVLEQQSNYSSCCTESVGGGEVSPSSTGDLRRWLR 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo345g00001 545 SMART iq_5 125 147 IPR000048 GO:0005515
Pumo345g00001 545 SMART iq_5 148 169 IPR000048 GO:0005515
Pumo345g00001 545 MobiDBLite consensus disorder prediction 399 415 - -
Pumo345g00001 545 MobiDBLite consensus disorder prediction 521 545 - -
Pumo345g00001 545 MobiDBLite consensus disorder prediction 303 415 - -
Pumo345g00001 545 PANTHER IQ-DOMAIN 5-RELATED 1 480 - -
Pumo345g00001 545 ProSiteProfiles IQ motif profile. 150 177 IPR000048 GO:0005515
Pumo345g00001 545 FunFam IQ-domain 11 125 176 - -
Pumo345g00001 545 MobiDBLite consensus disorder prediction 59 88 - -
Pumo345g00001 545 MobiDBLite consensus disorder prediction 445 479 - -
Pumo345g00001 545 Pfam Protein of unknown function (DUF4005) 389 492 IPR025064 -
Pumo345g00001 545 MobiDBLite consensus disorder prediction 303 318 - -
Pumo345g00001 545 MobiDBLite consensus disorder prediction 319 383 - -
Pumo345g00001 545 Pfam IQ calmodulin-binding motif 129 147 IPR000048 GO:0005515
Pumo345g00001 545 Pfam IQ calmodulin-binding motif 153 169 IPR000048 GO:0005515
Pumo345g00001 545 MobiDBLite consensus disorder prediction 19 57 - -
Pumo345g00001 545 MobiDBLite consensus disorder prediction 1 89 - -
Pumo345g00001 545 Gene3D - 123 179 - -
Pumo345g00001 545 ProSiteProfiles IQ motif profile. 126 154 IPR000048 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo345g00001 1 545 IQD Protein Family AT1G01110 57.218 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo345g00001 - - gmx:100786729 944.11