Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo327g00011 ATGTCTGATAATCGTGACATTCACAGCTCATCGGCACCGAAACTATTTGGTTTCCCACTAACAGAGCAGGAGGAATTTGCAGAAAGAAAATACGATGTTGGAGAGAGCAGAAAATTCAGGTGCCACTATTGCAAACGAGTATTCGCAAACTCACAGGCCTTAGGGGGCCACCAAAACGCCCACAAGAAAGAGCGTCAGAGAGCGAGGCGTTTCCAAATCCACACTCATAGACGCTCCATAGCAATAGCAGCAGCAGCAGCATCTTCTGCTCCTGTTCTCACCTCACATGCAATAATAAGATCATCAGTAGTACCACCGCACCCACCATCATCTGTTACAGTTACAGTACCCTCCATTTACTTACGAGGAGGCCCTCCTTCTCCTGTACCCATCTTCCATCCTCGTCAACAATTGCAATCCAATCTTAACACTAAGCACTTCCCCATTTTGATTCCTTCCTCCACCTTCCACCGTACTAATGCTCCTTGCTTTCCTTTTCAGCTTTATGCCTCACCCACTGTACTGCAATCTGCTCCTACTGTCGCTGATTTTTCTTCTGCAGAGAGGGAATTTGTTGATGTCCATCTCAAATTATAA 597 0.4606 MSDNRDIHSSSAPKLFGFPLTEQEEFAERKYDVGESRKFRCHYCKRVFANSQALGGHQNAHKKERQRARRFQIHTHRRSIAIAAAAASSAPVLTSHAIIRSSVVPPHPPSSVTVTVPSIYLRGGPPSPVPIFHPRQQLQSNLNTKHFPILIPSSTFHRTNAPCFPFQLYASPTVLQSAPTVADFSSAEREFVDVHLKL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo327g00011 198 Gene3D Classic Zinc Finger 22 96 - -
Pumo327g00011 198 FunFam Zinc finger protein 6 27 99 - -
Pumo327g00011 198 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Pumo327g00011 198 PANTHER ZINC FINGER PROTEIN 5 9 198 IPR044299 GO:0010090
Pumo327g00011 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Pumo327g00011 198 Pfam C2H2-type zinc finger 39 64 - -
Pumo327g00011 198 SUPERFAMILY beta-beta-alpha zinc fingers 36 66 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo327g00011 9 136 C2H2 Transcription Factor Family AT1G68360 34.375 8.99e-18 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo327g00011 zf-C2H2_6 2.4e-05 CL0361