Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo314g00001 ATGGCTTCTTCCGATTCCGTTCCTTCTCTCACCGTTGTCGGATACACACACACTGCCACTACTCTTCCACCAAACAACCACCTATCATCGCTATCACACGTCACTCTCGTAACCGTAACGGTCCTCGCCGTCGCCGTTACGGTTTCCTTAGCCTTATATTTCCTTCTCCGTCACCGTAACCGTTTCCTCCGTCGTGTCTCTCCGTCATCCGCTGCAGTGTTCTCCTCCGGCAATCGGATATCGCCGGAAACCGCTTCGTCTTCCGTTTTCGACTTACTCCCGACGTTCACCTTCTCCTCCGTCACGCGCCGCGCAGCCGCCGCCTCCGGCAGCTGCGGCGACTGCGCCGTGTGCCTGTCGAAGTTCGAGCAGCACGACATTCTCCGCTTGCTACCTCTCTGCTGCCACGCTTTTCACGCGGAATGCATCGACACGTGGCTCCGGTCGAATCTCACGTGTCCGCTCTGCCGATCCGCCGTCGCTGCGTCGGAATCAGACCTCGCAAAGGTTTTCCGGTCGTCGTCCGTCACCGGAGGCGACAGCTTCAGGCTGGAGATAGGGAACATCAGCAGCCGCCGCGGAGGAGCTACTTCCGCCGCCGCAGGAGGCGGCGGCGGAGAAACGCTCGGAAGGTCCTATTCCGTTGGCGCGTTCGAGTATTTCATCGACGAGGAGGCTGAGGTTGAGGTTGAGGTTGCGTTCGGTTATGCTGACCGGAGAAACGTTTCCGGCGAGAAAGACGACGGTGCTCCGGTGGAGGCTCCAGCGGATTCTCTGCCTAACTTAGCTGGTGAGGCAGGGCGCGGTGGAAGTAGCAGTAATAGTAATGGCTGGTTGAAGGATTACGTTGATCGTCTTTCGAATACGATGTCGTTTCGAAGTTCTGGAAGGTTCTTCACTGGGAGTAGTCGCAGAAACGACGTCGTTTTGGGTGGAGATTACGATGTGGAAGCCAACCGTTTCGGGGATGAAATCGGTGAAATGTTTCGATGGCTCTCAGGGGTTTGA 1008 0.5724 MASSDSVPSLTVVGYTHTATTLPPNNHLSSLSHVTLVTVTVLAVAVTVSLALYFLLRHRNRFLRRVSPSSAAVFSSGNRISPETASSSVFDLLPTFTFSSVTRRAAAASGSCGDCAVCLSKFEQHDILRLLPLCCHAFHAECIDTWLRSNLTCPLCRSAVAASESDLAKVFRSSSVTGGDSFRLEIGNISSRRGGATSAAAGGGGGETLGRSYSVGAFEYFIDEEAEVEVEVAFGYADRRNVSGEKDDGAPVEAPADSLPNLAGEAGRGGSSSNSNGWLKDYVDRLSNTMSFRSSGRFFTGSSRRNDVVLGGDYDVEANRFGDEIGEMFRWLSGV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo314g00001 335 CDD RING-H2_EL5-like 114 157 - -
Pumo314g00001 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 162 IPR013083 -
Pumo314g00001 335 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Pumo314g00001 335 SUPERFAMILY RING/U-box 110 162 - -
Pumo314g00001 335 SMART ring_2 115 156 IPR001841 -
Pumo314g00001 335 MobiDBLite consensus disorder prediction 244 274 - -
Pumo314g00001 335 Pfam Ring finger domain 114 157 IPR001841 -
Pumo314g00001 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 29 233 - -
Pumo314g00001 335 FunFam E3 ubiquitin-protein ligase ATL6 76 163 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo314g00001 87 233 C3H Transcription Factor Family AT2G18650 30.882 1.69e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo314g00001 K10663 - gmx:100804962 414.075