Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g02686 ATGCTGAAACCAACATCTCTAACCCACATATCCTCCTTTCTCTTAGCCATGCCCTCTGCAACTGCAAGGTTCGGATTGTTCTTCTGTCACTGTCACTGTCACTGTCACACTCGACACTTGTCCACACTCCCTCCTTTTTCTTCTTCCTTTCCCTTCCCGCGTCCAAGACTCCTCTCCACCACTCCCACGCCATACCCTCTCCAATACGAGCTCATCATCAACCGTCCATCATACCCCGACACTCGCCGTCCACCACCTGCTCGACCTATTGACTCCCCTTCCCCCGACCCCGATGAGCCCACTTCCGAGGCCCGGCCCGAACTCAACAAGGCCCAGAGGAAGTACTACAACAAACGCAGGAAGAGGATGTACGGCTCCGACGAAGACGAAGACGACGCCCGACGCGACGAAACGTTCGTGGAGTTGAAGCCCGAGGTAGTGGAGTTTCCCACGCTGCACAAGAGGGAGGAAGAGTTGTACTTCTACGACGCGTTCACGTATCCCTGGGAGAAGGACAAGCATTACAAAATGGTTTATCAGTTGGAGAAAAAGTATTTTCCTGATCAATGCCTCGACAAGGCCTTTCTCCAACCGGGACAGTCAAATGCATATGTAAATGCAAATGCAAATGCAAATGCAGATGCAGATGCAGATGCAAATGGCAAGGCTAAGGGTAAGGGTAGGAAGAAAGTTGATGTTGGTGGTGGTGATGACAAGTTGGTCTTTTTTGAGGAGGGAAAACAGAAGGGTGAGGAGAGTGGAAGTGGAAGTAGACAACTTAAGGAGAAGAAGGTTGAGGAGTTCTTCAAGGGTTTGAACAAGGTTCCTACTAATAACAATAACAAGGATGTTCAAGTTGGAGAGCCTTTTCTTTCCTCAAGGAGGACTGGTCTTCCTCCCCTCTGGGACACTCCACATGGCACTGTGCTCTTGGTCAACAAACCAAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTGCGTCGCCTTGTCAAAGTGAAAAAGGTAGGTCATGCTGGGACTCTTGACCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGTAAAGCAACAAAACTGGTAGACAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCTTGGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCACTCAACGTGAGCCATGGGAGCACATCAAAGATGAGGATATAAAGAGAAATTCTTTGTCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGCGAAAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCCAGACGAATATCAATTTTCCAGTTTGACATAGAGCGTAGCTTGGATGACAGACAAAATTTGATTTTTAGAGTGACTTGTTCCAAAGGGACATATATTCGGTCACTCTGTGCAGATTTTGGGAAGGCTCTTGGCAGCTGTGCCCATTTGACTGCTCTCCGAAGAGATTCAATTGGGCAATATTCAGCAGATGATGCATGGGAGTTTCAAGAGCTGGAAGAGGCTATCACCAAAAACTATCTCTAA 1581 0.4738 MLKPTSLTHISSFLLAMPSATARFGLFFCHCHCHCHTRHLSTLPPFSSSFPFPRPRLLSTTPTPYPLQYELIINRPSYPDTRRPPPARPIDSPSPDPDEPTSEARPELNKAQRKYYNKRRKRMYGSDEDEDDARRDETFVELKPEVVEFPTLHKREEELYFYDAFTYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLQPGQSNAYVNANANANADADADANGKAKGKGRKKVDVGGGDDKLVFFEEGKQKGEESGSGSRQLKEKKVEEFFKGLNKVPTNNNNKDVQVGEPFLSSRRTGLPPLWDTPHGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVTQREPWEHIKDEDIKRNSLSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFQELEEAITKNYL 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g02686 526 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 184 524 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pumo2g02686 526 Hamap tRNA pseudouridine synthase B [truB]. 306 526 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pumo2g02686 526 MobiDBLite consensus disorder prediction 76 135 - -
Pumo2g02686 526 CDD PseudoU_synth_EcTruB 309 520 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pumo2g02686 526 FunFam tRNA pseudouridine synthase B 303 525 - -
Pumo2g02686 526 Pfam TruB family pseudouridylate synthase (N terminal domain) 328 478 IPR002501 GO:0006396
Pumo2g02686 526 Gene3D Pseudouridine synthase 303 525 - -
Pumo2g02686 526 SUPERFAMILY Pseudouridine synthase 308 521 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pumo2g02686 526 MobiDBLite consensus disorder prediction 98 113 - -
Pumo2g02686 526 MobiDBLite consensus disorder prediction 79 96 - -
Pumo2g02686 526 NCBIfam tRNA pseudouridine(55) synthase TruB 308 517 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pumo2g02686 526 Pfam tRNA pseudouridylate synthase B C-terminal domain 479 522 IPR032819 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g02686 Pumo-Chr2 58639633 58644542 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g02686 300 500 NAC Transcription Factor Family AT3G57150 33.333 1.06e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g02686 K03177 - gmx:100793939 762.296